Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316H02f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16275-1|CAA34351.1|  621|Drosophila melanogaster lamin protein.       44   1e-04
X07278-1|CAA30259.1|  622|Drosophila melanogaster protein ( Dros...    44   1e-04
BT001506-1|AAN71261.1|  622|Drosophila melanogaster LD38055p pro...    44   1e-04
AE014134-935|AAF52262.1|  622|Drosophila melanogaster CG6944-PA ...    44   1e-04
X75886-1|CAA53480.1|  621|Drosophila melanogaster nuclear lamin ...    44   1e-04
L07933-1|AAA28666.1|  621|Drosophila melanogaster lamin C like p...    44   1e-04
AY095046-1|AAM11374.1|  621|Drosophila melanogaster LD31805p pro...    44   1e-04
AE013599-1908|AAF58237.1|  621|Drosophila melanogaster CG10119-P...    44   1e-04
AY128433-1|AAM75026.1|  453|Drosophila melanogaster HL05903p pro...    28   6.7  

>X16275-1|CAA34351.1|  621|Drosophila melanogaster lamin protein.
          Length = 621

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 102 PPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQIS--TSAQR 239
           PP  +VMK QKW  AD   T LLN+E E VA  +R +R +S  TS+ R
Sbjct: 541 PPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRIKRIVSQHTSSSR 588


>X07278-1|CAA30259.1|  622|Drosophila melanogaster protein (
           Drosophila mRNA fornuclear lamin Dm0. ).
          Length = 622

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 102 PPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQIS--TSAQR 239
           PP  +VMK QKW  AD   T LLN+E E VA  +R +R +S  TS+ R
Sbjct: 542 PPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRIKRIVSQHTSSSR 589


>BT001506-1|AAN71261.1|  622|Drosophila melanogaster LD38055p
           protein.
          Length = 622

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 102 PPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQIS--TSAQR 239
           PP  +VMK QKW  AD   T LLN+E E VA  +R +R +S  TS+ R
Sbjct: 542 PPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRIKRIVSQHTSSSR 589


>AE014134-935|AAF52262.1|  622|Drosophila melanogaster CG6944-PA
           protein.
          Length = 622

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 102 PPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQIS--TSAQR 239
           PP  +VMK QKW  AD   T LLN+E E VA  +R +R +S  TS+ R
Sbjct: 542 PPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRIKRIVSQHTSSSR 589


>X75886-1|CAA53480.1|  621|Drosophila melanogaster nuclear lamin C
           protein protein.
          Length = 621

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/48 (41%), Positives = 33/48 (68%)
 Frame = +3

Query: 102 PPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHR 245
           PP+++VMK +KW VA++  + L N ++E+VA  +R R  +S+   RHR
Sbjct: 547 PPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHR 593


>L07933-1|AAA28666.1|  621|Drosophila melanogaster lamin C like
           protein protein.
          Length = 621

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/48 (41%), Positives = 33/48 (68%)
 Frame = +3

Query: 102 PPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHR 245
           PP+++VMK +KW VA++  + L N ++E+VA  +R R  +S+   RHR
Sbjct: 547 PPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHR 593


>AY095046-1|AAM11374.1|  621|Drosophila melanogaster LD31805p
           protein.
          Length = 621

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/48 (41%), Positives = 33/48 (68%)
 Frame = +3

Query: 102 PPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHR 245
           PP+++VMK +KW VA++  + L N ++E+VA  +R R  +S+   RHR
Sbjct: 547 PPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHR 593


>AE013599-1908|AAF58237.1|  621|Drosophila melanogaster CG10119-PA
           protein.
          Length = 621

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/48 (41%), Positives = 33/48 (68%)
 Frame = +3

Query: 102 PPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHR 245
           PP+++VMK +KW VA++  + L N ++E+VA  +R R  +S+   RHR
Sbjct: 547 PPNNLVMK-KKWPVANSMRSVLANADKEDVASYDRVRANVSSHTSRHR 593


>AY128433-1|AAM75026.1|  453|Drosophila melanogaster HL05903p
           protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 256 CASSRCLCALVLICRR*RSEIATSSCSLL 170
           C +S C  A+V  CRR RS   +S CS++
Sbjct: 10  CIASCCRLAIVESCRRVRSPHRSSMCSVM 38


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,008,934
Number of Sequences: 53049
Number of extensions: 430755
Number of successful extensions: 1266
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)