Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316G08f
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   1.5  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   3.5  

>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +3

Query: 357 CSGCSYIRSLRSSLCSIAVYCGFCSLHRSTLCFCSLHRSTL 479
           C   SY   +  S  SI V    C LH   LC C L   TL
Sbjct: 664 CKAFSYFSQVACSCKSITV----CPLHIEYLCKCDLSNKTL 700


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 469 RCKEQKHRVLRCKEQKPQYTAMLHKELRSERM*EQPEQL 353
           + + +KH  ++ ++QK +    L K LR +R  E  E+L
Sbjct: 45  KVERRKHAQVQLEQQKREERLALRKSLREQRKRELAERL 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,371,302
Number of Sequences: 5004
Number of extensions: 20602
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)