Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316G07f
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   1.1  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    27   1.4  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   4.3  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   5.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   7.4  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 219 SGSPSPAIDGLLSCLGAGF 163
           S SPSP IDG  + +G GF
Sbjct: 80  SSSPSPKIDGTAASIGMGF 98


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 173 PK-QESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYI 280
           PK Q  RP I+ +   E  K  D+K++  +E+++E I
Sbjct: 143 PKSQRKRPKISFDSVAELAKESDEKQNAYEEKIEERI 179


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 98  CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 3
           CW  I    G S  L+  AL+L PA+    NV
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNV 323


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 218 EFIKRQDQKRSDLDEQLKEY 277
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 273 NTSTNGANSGPRRRMSSNALKRSRPSARFLV 365
           N     A   P    SSN+ K S PS  FLV
Sbjct: 793 NIPLGHALGNPESNNSSNSFKPSHPSQSFLV 823


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,343
Number of Sequences: 5004
Number of extensions: 17432
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)