Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316G06f
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    26   2.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   4.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   8.2  

>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 123 EFLFWEQVKYQDLRDNKLTFLVKRLAFKT 209
           + + W + ++Q++++    FL+K + FKT
Sbjct: 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKT 354


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 208 VLNAKRLTRNVNLLSRRS*YLTCSQNK 128
           VL +KRL R+  + S    YLTC  NK
Sbjct: 278 VLISKRLYRSSEVASHTLTYLTCVANK 304


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 69  CKLIANTFPLL*NVFFCFEFLFWE 140
           C L+ N+F  L + FF F   FW+
Sbjct: 807 CVLVFNSFGKLPSNFFTFPASFWD 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,187
Number of Sequences: 5004
Number of extensions: 24175
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)