Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316G06f
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   0.79 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   1.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   2.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.4  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   9.7  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   9.7  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   9.7  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 339 KHSQNINLN*YNKR*RFRSYILDL 268
           K+S   N N YNK+  +++YI+++
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYIINI 113


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 348 YVTKHSQNINLN*YNKR*RFRSYILDL 268
           Y   +  N N N YNK+  +++YI+++
Sbjct: 98  YNYNNKYNYNNNNYNKKLYYKNYIINI 124


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 327 NINLN*YNKR*RFRSYILDL 268
           N N N YNK+  +++YI+++
Sbjct: 335 NNNYNNYNKKLYYKNYIINI 354


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 354 NLYVTKHSQNINLN*YNKR*RFRSYILDL 268
           N     ++   N N YNK+  +++YI+++
Sbjct: 321 NYNYNNNNYKYNYNNYNKKLYYKNYIINI 349


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +3

Query: 240 KCNFHSQQSANPVYKSETFIFCC 308
           +C+ + Q S + +++ E    CC
Sbjct: 56  RCSSYLQVSGSKIWQMERSCMCC 78


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2
          protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 26 LSFRHGWQSRE 58
          LS  HGWQ R+
Sbjct: 8  LSTSHGWQIRD 18


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
          protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 26 LSFRHGWQSRE 58
          LS  HGWQ R+
Sbjct: 13 LSTSHGWQIRD 23


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
          protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 26 LSFRHGWQSRE 58
          LS  HGWQ R+
Sbjct: 13 LSTSHGWQIRD 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,144
Number of Sequences: 438
Number of extensions: 1500
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)