Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316G04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 54 1e-08
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 3.0
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 26 3.0
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 5.2
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 25 6.8
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 25 6.8
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 25 6.8
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 25 9.0
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 9.0
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 9.0
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 54.0 bits (124), Expect = 1e-08
Identities = 29/73 (39%), Positives = 37/73 (50%)
Frame = +2
Query: 299 HSKLLKKCLINLPKSYECLDASRTWIIYWILHSLWILNDMPDHETLSAVVKFLDQCQHED 478
H K L K L LP + LDASR W++YW L SL IL + D + + Q +
Sbjct: 34 HLKYLTKMLDPLPSPFTVLDASRAWMVYWELSSLAILGKL-DSSVCERAISSVRQLKGPS 92
Query: 479 GGYGGGPRQYPHL 517
GG+ GG Q HL
Sbjct: 93 GGFCGGNGQDEHL 105
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 3.0
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 74 CHRRIPIRTGILVINMENQVRCYNDIVSEAFDSED--VKTDTSIDQIYVEKTILKLYKEF 247
C+ PI++G+L+ M NQ Y + V + D+E K S ++ + IL+ +
Sbjct: 3868 CYPATPIQSGLLLETM-NQKNLYQNDVLFSLDAEISLEKLQNSWKRLCQKNAILRTHFAI 3926
Query: 248 EKNSSIDPDLPLLIKEVHSKLLKKCL 325
++SS P++I+ V + CL
Sbjct: 3927 SEDSS----EPMVIQIVDKFEARSCL 3948
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 104 ILVINMENQVRCYNDIVSEAFDSEDVKTDTSIDQIYVEKTILKLYKEFEKNSSIDPDLPL 283
+L++ ENQ R + + + T S+ Q+Y+ + L EKN+S DL L
Sbjct: 166 VLIMQCENQSRIDPNFSLQTLRLYTLPTSRSLRQVYL--ILRDLLLSMEKNASSSDDLGL 223
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 327 SICQKVMNALMLAEPGSYIGFYIHYGFLMTCPTMR 431
S C+++ AL Y+G+YIH TCP M+
Sbjct: 198 SACREIWLALECGYRYYYMGYYIH-----TCPKMK 227
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 263 IDPDLPLLIKEVHSKLLKKCLINLPKSYECLDASRTWIIY 382
+D LPL ++L++ L+ L K Y+C + +I++
Sbjct: 79 VDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVH 118
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -3
Query: 270 GSMEEFFSNSLYNFKIVFST*I*SIDVSVLTSSESKASDTISL*QRTWFSILITSIPVRM 91
G M EFF Y+F V + I S ++ ++SL + W I I IP+++
Sbjct: 94 GLMMEFFG---YSFDRVGCMELAFISFSAACYFNIRSIKSLSLKNKNWTIISIIEIPIKL 150
Query: 90 GILL 79
+L
Sbjct: 151 HFIL 154
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 398 LWILNDMPDHETLSAVVKFLDQCQH 472
LW+ M D E LSAV +F+ +C H
Sbjct: 645 LWLTRFMGD-EYLSAVSEFIQRCFH 668
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/92 (22%), Positives = 39/92 (42%)
Frame = +2
Query: 53 LSDLQNVCHRRIPIRTGILVINMENQVRCYNDIVSEAFDSEDVKTDTSIDQIYVEKTILK 232
+S + V R P + +NQV+ I+ A +SED + +D I+
Sbjct: 224 MSSKRAVPGRSQPYDVLLAACQKKNQVKIQRQILETAKESEDNQHQAPVDSDEEVSFIMN 283
Query: 233 LYKEFEKNSSIDPDLPLLIKEVHSKLLKKCLI 328
+ ++ N ++ + L +K HS + LI
Sbjct: 284 VLQK-SGNQPLEQKVFLPVKRRHSYFRTRELI 314
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 123 KTKSVVTTILYRKLSILKMLKQTHQ 197
+TKS +T I+Y S K+LK H+
Sbjct: 308 QTKSKLTAIVYHGASRYKLLKVIHE 332
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 242 EFEKNSSIDPDLPLLIKEVHSKLL 313
E E+N S+D + L KE H KLL
Sbjct: 33 EEEENDSVDNEEIKLTKEKHEKLL 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,197
Number of Sequences: 5004
Number of extensions: 49596
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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