Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316G04f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L00635-1|AAA35854.1| 437|Homo sapiens farnesyl-protein transfer... 105 9e-23
BC020232-1|AAH20232.1| 437|Homo sapiens farnesyltransferase, CA... 105 9e-23
L10414-1|AAA86286.1| 387|Homo sapiens farnesyl-protein transfer... 93 4e-19
AL731568-1|CAH73047.1| 198|Homo sapiens chromosome 10 open read... 32 1.4
AF267860-1|AAG44729.1| 198|Homo sapiens CDA017 protein. 32 1.4
L25441-1|AAA35888.1| 377|Homo sapiens geranylgeranyltransferase... 31 2.4
AY780790-1|AAV98360.1| 300|Homo sapiens geranylgeranyltransfera... 31 2.4
DQ451401-1|ABD96829.1| 282|Homo sapiens RAD1 homolog (S. pombe)... 29 7.5
BT006908-1|AAP35554.1| 282|Homo sapiens RAD1 homolog (S. pombe)... 29 7.5
BC037857-1|AAH37857.1| 282|Homo sapiens RAD1 protein protein. 29 7.5
BC009804-1|AAH09804.1| 282|Homo sapiens RAD1 homolog (S. pombe)... 29 7.5
BC006837-1|AAH06837.1| 282|Homo sapiens RAD1 homolog (S. pombe)... 29 7.5
AJ004974-1|CAA06248.1| 282|Homo sapiens cell cycle checkpoint p... 29 7.5
AF084512-1|AAC35549.1| 282|Homo sapiens DNA repair exonuclease ... 29 7.5
AF076841-1|AAC95523.1| 282|Homo sapiens Rad1-like protein protein. 29 7.5
AF074717-1|AAC98093.1| 282|Homo sapiens Rad1-like DNA damage ch... 29 7.5
AF073524-1|AAC95466.1| 282|Homo sapiens RAD1 protein. 29 7.5
AF058392-1|AAC14138.1| 282|Homo sapiens cell cycle checkpoint p... 29 7.5
AF030933-1|AAC95427.1| 282|Homo sapiens exonuclease homolog RAD... 29 7.5
AF011905-1|AAC27243.1| 282|Homo sapiens HRAD1 protein. 29 7.5
>L00635-1|AAA35854.1| 437|Homo sapiens farnesyl-protein transferase
beta-subunit protein.
Length = 437
Score = 105 bits (252), Expect = 9e-23
Identities = 53/120 (44%), Positives = 76/120 (63%)
Frame = +2
Query: 158 EAFDSEDVKTDTSIDQIYVEKTILKLYKEFEKNSSIDPDLPLLIKEVHSKLLKKCLINLP 337
E + V+T TSI+Q VE+ I +++ ++ N + P L +L +E H LK+ L L
Sbjct: 33 ERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLV-PRL-VLQREKHFHYLKRGLRQLT 90
Query: 338 KSYECLDASRTWIIYWILHSLWILNDMPDHETLSAVVKFLDQCQHEDGGYGGGPRQYPHL 517
+YECLDASR W+ YWILHSL +L++ + V +FL+ CQ +GG+GGGP QYPHL
Sbjct: 91 DAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHL 150
>BC020232-1|AAH20232.1| 437|Homo sapiens farnesyltransferase, CAAX
box, beta protein.
Length = 437
Score = 105 bits (252), Expect = 9e-23
Identities = 53/120 (44%), Positives = 76/120 (63%)
Frame = +2
Query: 158 EAFDSEDVKTDTSIDQIYVEKTILKLYKEFEKNSSIDPDLPLLIKEVHSKLLKKCLINLP 337
E + V+T TSI+Q VE+ I +++ ++ N + P L +L +E H LK+ L L
Sbjct: 33 ERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLV-PRL-VLQREKHFHYLKRGLRQLT 90
Query: 338 KSYECLDASRTWIIYWILHSLWILNDMPDHETLSAVVKFLDQCQHEDGGYGGGPRQYPHL 517
+YECLDASR W+ YWILHSL +L++ + V +FL+ CQ +GG+GGGP QYPHL
Sbjct: 91 DAYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHL 150
>L10414-1|AAA86286.1| 387|Homo sapiens farnesyl-protein transferase
beta-subunit protein.
Length = 387
Score = 93.5 bits (222), Expect = 4e-19
Identities = 46/102 (45%), Positives = 66/102 (64%)
Frame = +2
Query: 212 VEKTILKLYKEFEKNSSIDPDLPLLIKEVHSKLLKKCLINLPKSYECLDASRTWIIYWIL 391
VE+ I +++ ++ N + P L +L +E H LK+ L L +YECLDASR W+ YWIL
Sbjct: 1 VEEKIQEVFSSYKFNHLV-PRL-VLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWIL 58
Query: 392 HSLWILNDMPDHETLSAVVKFLDQCQHEDGGYGGGPRQYPHL 517
HSL +L++ + V +FL+ CQ +GG+GGGP QYPHL
Sbjct: 59 HSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHL 100
>AL731568-1|CAH73047.1| 198|Homo sapiens chromosome 10 open reading
frame 11 protein.
Length = 198
Score = 31.9 bits (69), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 47 NRLSDLQNVCHRRIPIRTGILVINMENQVRCYNDIVSEAFDSEDVK 184
NR++DL+N+ + + +++ V C N++VS D ED K
Sbjct: 57 NRITDLENLLDHLAEVTPALEYLSLLGNVACPNELVSLEKDEEDYK 102
>AF267860-1|AAG44729.1| 198|Homo sapiens CDA017 protein.
Length = 198
Score = 31.9 bits (69), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 47 NRLSDLQNVCHRRIPIRTGILVINMENQVRCYNDIVSEAFDSEDVK 184
NR++DL+N+ + + +++ V C N++VS D ED K
Sbjct: 57 NRITDLENLLDHLAEVTPALEYLSLLGNVACPNELVSLEKDEEDYK 102
>L25441-1|AAA35888.1| 377|Homo sapiens geranylgeranyltransferase
type I beta-subunit protein.
Length = 377
Score = 31.1 bits (67), Expect = 2.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 287 IKEVHSKLLKKCLINLPKSYECLDASRTWIIYWILHSLWILNDM 418
+++ H + ++CL LP+ Y L+ SR I ++ L L +L+ +
Sbjct: 21 LRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSL 64
>AY780790-1|AAV98360.1| 300|Homo sapiens geranylgeranyltransferase
type I beta subunit protein.
Length = 300
Score = 31.1 bits (67), Expect = 2.4
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 287 IKEVHSKLLKKCLINLPKSYECLDASRTWIIYWILHSLWILNDM 418
+++ H + ++CL LP+ Y L+ SR I ++ L L +L+ +
Sbjct: 21 LRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSL 64
>DQ451401-1|ABD96829.1| 282|Homo sapiens RAD1 homolog (S. pombe)
protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>BT006908-1|AAP35554.1| 282|Homo sapiens RAD1 homolog (S. pombe)
protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>BC037857-1|AAH37857.1| 282|Homo sapiens RAD1 protein protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>BC009804-1|AAH09804.1| 282|Homo sapiens RAD1 homolog (S. pombe)
protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>BC006837-1|AAH06837.1| 282|Homo sapiens RAD1 homolog (S. pombe)
protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>AJ004974-1|CAA06248.1| 282|Homo sapiens cell cycle checkpoint
protein protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>AF084512-1|AAC35549.1| 282|Homo sapiens DNA repair exonuclease
protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>AF076841-1|AAC95523.1| 282|Homo sapiens Rad1-like protein protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>AF074717-1|AAC98093.1| 282|Homo sapiens Rad1-like DNA damage
checkpoint protein protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>AF073524-1|AAC95466.1| 282|Homo sapiens RAD1 protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>AF058392-1|AAC14138.1| 282|Homo sapiens cell cycle checkpoint
protein Hrad1 protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>AF030933-1|AAC95427.1| 282|Homo sapiens exonuclease homolog RAD1
protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
>AF011905-1|AAC27243.1| 282|Homo sapiens HRAD1 protein.
Length = 282
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 268 INGGIFLEFLVQFQNCFFNINLIY*CVCFNIF 173
I GIF EF VQ ++ F INL C +IF
Sbjct: 65 IQAGIFQEFKVQEESVTFRINLTVLLDCLSIF 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,898,654
Number of Sequences: 237096
Number of extensions: 1599954
Number of successful extensions: 2687
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2687
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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