Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316G04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               25   0.47 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.7  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 266 DPDLPLLIKEVHSKLLKKCLINLPKSYECLDASR 367
           D D+ + +K+   K++++C+ N     +CL A +
Sbjct: 83  DTDMDMDLKDSIRKIIRQCVDNAKNEDKCLTAQK 116


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 287 IKEVHSKLLKKCLINLPKSYE---CLDAS 364
           ++E     L++CL++L K+YE   CL AS
Sbjct: 427 LRESFIGTLQRCLLSLEKTYERDTCLLAS 455


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 287 IKEVHSKLLKKCLINLPKSYE---CLDAS 364
           ++E     L++CL++L K+YE   CL AS
Sbjct: 465 LRESFIGTLQRCLLSLEKTYERDTCLLAS 493


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 256 IFLEFLVQFQNCFFNINLIY*CVCFNIFRIESF 158
           IF    ++ +  F+ +NLI  CV  +   + +F
Sbjct: 225 IFFNITLRRKTLFYTVNLIVPCVSISYLSVLAF 257


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 344 NFLAN*LNIFLITCCELLLSKVVNQDQWRNFSRIP 240
           NFL++   +F      LLL+   N  +W +++ IP
Sbjct: 536 NFLSDINGVFTSIASLLLLNLSENHIEWFDYAFIP 570


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 491  HHNRHLHVDTDLRILLLQKES 429
            +HN  LH+  D  + +L +E+
Sbjct: 1481 NHNEKLHIPKDKSVSVLSREN 1501


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 491 HHNRHLHVDTDLRILLLQKESHGRA 417
           HHN  +H D     LLL  ++ G A
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAA 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,978
Number of Sequences: 438
Number of extensions: 3310
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)