Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316G03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...   111   6e-26
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   1.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   3.0  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   6.8  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   9.0  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   9.0  

>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score =  111 bits (267), Expect = 6e-26
 Identities = 54/120 (45%), Positives = 79/120 (65%), Gaps = 2/120 (1%)
 Frame = +3

Query: 165 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI- 341
           ++A I PS+L  D + L +E  ++L  G+D+LH+DVMD QFVPNLT G  VVK +R    
Sbjct: 2   VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYT 61

Query: 342 -KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKP 518
            ++AFF+ H+MV +PE++I  +ADAG + + FH E  +   E+  +  E GM VG A+KP
Sbjct: 62  KEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKP 121


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 245 WSRLFTFRCNGWSVCT 292
           WSR F   C G+SVCT
Sbjct: 6   WSRNFLCSCRGFSVCT 21


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +3

Query: 162 HLKALIGPSILNADLSQLYEESQKLLD-NGADY----LHLDVMDGQFVPNLTFGH 311
           HLK +I  + LNA+  QLY E   L+   G  Y     +L+ +  QF  + +FG+
Sbjct: 783 HLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRFYLEDILSQFGNDKSFGN 837


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 419 DSSISHWCYPLLWFLNHHVSFKEGIFYFSSKALH 318
           D+ I +  YP    L+ H+S K+ I YFS+K  H
Sbjct: 419 DNLIDNLKYPQS--LDDHLSSKKPISYFSNKLTH 450


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 357 ETHMMVEKPEQWITPMADAGVNQYTFHIEP 446
           E +  V KP+   T   +  VNQY + +EP
Sbjct: 116 EVNSEVVKPDSATTENENRYVNQYNYPVEP 145


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 449 NRFYMKCVLIDSSISHWCYPLLWFLNHHVSFKEGIFYFSSKALHYRV 309
           NR+ ++  L +S+   W YP+      +VSF++  F    KAL   V
Sbjct: 49  NRYRLQHELDESAAQQWVYPI------NVSFRDYQFNIVQKALFENV 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,072
Number of Sequences: 5004
Number of extensions: 33633
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)