Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316F11f
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 28 0.78
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 3.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 3.1
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 3.1
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 5.5
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 25 7.3
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 24 9.6
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 24 9.6
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 24 9.6
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 24 9.6
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 24 9.6
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 27.9 bits (59), Expect = 0.78
Identities = 14/65 (21%), Positives = 31/65 (47%)
Frame = -2
Query: 236 YARIVVSVDLYVTYDDACSCSAILWNRVVWSQLPSVVFIKSSY*VFKTVFLFLIIYVCNY 57
Y+ I + +Y+ I +++V +P + + ++ V V + I+Y+C++
Sbjct: 117 YSEIWGPIAIYICLFVLLLLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKILYICHW 176
Query: 56 LFINF 42
L NF
Sbjct: 177 LLQNF 181
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.8 bits (54), Expect = 3.1
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +3
Query: 162 PENGRAATGVVISNI*VHANNNARVDIGYSNKPLWIAPGPKVPITLAALPRCMAMDNI*T 341
P G+AA + N ++A V Y+ KP GP + A A+ +
Sbjct: 127 PHAGKAAQSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGPVFATSSQAAASETALP---S 183
Query: 342 RYDPDQGSWPSNKPLGKVQS 401
Y+PD+ + L K+ +
Sbjct: 184 GYEPDEARFIGASQLAKLSA 203
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 199 LMTTPVAALPFSGIELYGVSYLLSFSLSLHT 107
+M P+A GIE+Y + YLL + ++ T
Sbjct: 1465 IMQKPIATSAVQGIEVYDIIYLLLKAYAMGT 1495
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 319 IQRGNAASVMGTFGPGAIQSGLFE*PMSTRALLLAWTYMLLMTTP 185
IQR AA TF P + F P S +L ++ Y+L T P
Sbjct: 161 IQRHTAALGARTFAPDLRLAPQFPFPCSLHDVLSSYLYLLKSTKP 205
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = -1
Query: 381 AYLTATILGLGRTWFR--YYPL 322
AY+ +L G +WFR Y+PL
Sbjct: 413 AYILGNVLDCGMSWFRNEYWPL 434
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 24.6 bits (51), Expect = 7.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -2
Query: 344 PGSDIIHCHTAW 309
PG+ +IHCH W
Sbjct: 474 PGAWVIHCHIEW 485
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 141 LTPYNSIPENGRAATGV 191
+ P+ +IPENGR G+
Sbjct: 726 IVPFAAIPENGREIDGI 742
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 382 GLFDGHDPWSGS-YLVQILSIAIQR 311
G+FDGH W+ S +L Q L A+ R
Sbjct: 118 GIFDGHSGWNTSLFLRQHLVPAVVR 142
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 24.2 bits (50), Expect = 9.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 316 VWQ-WIISEPGTTQTKDRGRQISLWVKFSHASPRCAWRVDDREATS 450
VW W+ S T + K GR I +F HA R + DD E S
Sbjct: 773 VWHPWLQSY--TFEDKYVGRDIKAGEEFQHALMRYLGKTDDDEDNS 816
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/61 (19%), Positives = 29/61 (47%)
Frame = -2
Query: 236 YARIVVSVDLYVTYDDACSCSAILWNRVVWSQLPSVVFIKSSY*VFKTVFLFLIIYVCNY 57
Y+ I + +Y+ I +++V +P + + ++ V V + I+Y+C++
Sbjct: 117 YSEIWGPIAIYICLFILLLLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKILYICHW 176
Query: 56 L 54
L
Sbjct: 177 L 177
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/61 (19%), Positives = 29/61 (47%)
Frame = -2
Query: 236 YARIVVSVDLYVTYDDACSCSAILWNRVVWSQLPSVVFIKSSY*VFKTVFLFLIIYVCNY 57
Y+ I + +Y+ I +++V +P + + ++ V V + I+Y+C++
Sbjct: 117 YSEIWGPIAIYICLFVLLLLGLIYCSKIVVKAIPLISIVIAAVVVIIAVAMVKILYICHW 176
Query: 56 L 54
L
Sbjct: 177 L 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,846
Number of Sequences: 5004
Number of extensions: 40561
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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