Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316F11f
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225...    29   2.3  
03_06_0569 + 34789286-34790052,34791216-34791512,34791604-347918...    28   4.1  
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453...    27   9.5  

>01_01_0272 -
           2249662-2249721,2250110-2250335,2250419-2250615,
           2250707-2250955,2251047-2251176,2251473-2251564,
           2251735-2251855,2251940-2252028,2252149-2252271,
           2252379-2252506,2253039-2253147,2253701-2254000
          Length = 607

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 347 VPGSDIIHCHTAWQC 303
           +PGSD +HCHT   C
Sbjct: 129 MPGSDTLHCHTTLTC 143


>03_06_0569 +
           34789286-34790052,34791216-34791512,34791604-34791835,
           34792334-34792391,34792800-34792931,34793108-34793246,
           34793460-34793622,34793693-34793734
          Length = 609

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 225 NARVDIGYSNKPLWIAPGPKVPITLAALPRCMAMD 329
           + R+D+  SN  + +  GP V + LAAL R M+++
Sbjct: 76  HGRLDVMVSNAGVLLPTGPVVDMDLAALDRVMSVN 110


>06_01_0623 +
           4536817-4536868,4537129-4537328,4537401-4537609,
           4538531-4538954
          Length = 294

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 NKPLWIAPGPKVP 290
           N P+W+APG +VP
Sbjct: 33  NSPIWLAPGTEVP 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,591,468
Number of Sequences: 37544
Number of extensions: 266208
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)