Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316F11f
(456 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 25 0.51
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 24 0.90
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 24 0.90
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 1.2
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 23 2.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 3.6
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 3.6
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 22 3.6
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 21 4.8
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 21 4.8
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 21 4.8
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 24.6 bits (51), Expect = 0.51
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 368 PRSLVWVVPGSDIIHCHTAW 309
PR L W VP ++IH W
Sbjct: 18 PRLLGWNVPAEELIHIPEHW 37
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.8 bits (49), Expect = 0.90
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -2
Query: 86 LFLIIYVCNYLFINFTGII*YFSSLY 9
++++ Y C + + +TG + YF+SL+
Sbjct: 216 VWIMCYFCIWKGVKWTGKVVYFTSLF 241
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.8 bits (49), Expect = 0.90
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -2
Query: 86 LFLIIYVCNYLFINFTGII*YFSSLY 9
++++ Y C + + +TG + YF+SL+
Sbjct: 269 VWIMCYFCIWKGVKWTGKVVYFTSLF 294
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.4 bits (48), Expect = 1.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 152 VWSQLPSVVFIKSSY*VFKTVFLFLIIYVCNYLFIN 45
V + LP V +IK+S F +FL + + F+N
Sbjct: 281 VENSLPKVSYIKASEIWFLGCTIFLFAAMVEFAFVN 316
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 22.6 bits (46), Expect = 2.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -2
Query: 152 VWSQLPSVVFIKSSY*VFKTVFLFLIIYVCNYLFINFT 39
V S LP + ++K+ F+F+ + Y +N+T
Sbjct: 291 VRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYT 328
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 3.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 262 SGSHPARKYPLR*QHCHAVWQWIISEPGTTQTKD 363
+G P KY L Q + V +SEP TQT +
Sbjct: 1075 TGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTME 1108
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 3.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 262 SGSHPARKYPLR*QHCHAVWQWIISEPGTTQTKD 363
+G P KY L Q + V +SEP TQT +
Sbjct: 1071 TGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTME 1104
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.8 bits (44), Expect = 3.6
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +3
Query: 66 YINNQKQKNCLKYSV*RLNENDRR*LTPYNSIPEN 170
Y+++ Q+N K + + L+ YN +P N
Sbjct: 666 YVSHANQRNMYKLDLKNMKYTRSADLSSYNCVPIN 700
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 4.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 212 DLYVTYDDACSCSAILWNRVVWSQLPSVVFIK 117
D+Y Y+ A C A + W++ V+++K
Sbjct: 232 DIYSGYEGALRCLAHNGGEIAWTK---VIYVK 260
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 4.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 212 DLYVTYDDACSCSAILWNRVVWSQLPSVVFIK 117
D+Y Y+ A C A + W++ V+++K
Sbjct: 232 DIYSGYEGALRCLAHNGGEIAWTK---VIYVK 260
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.4 bits (43), Expect = 4.8
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 212 DLYVTYDDACSCSAILWNRVVWSQLPSVVFIK 117
D+Y Y+ A C A + W++ V+++K
Sbjct: 232 DIYSGYEGALRCLAHNGGEIAWTK---VIYVK 260
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,370
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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