Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316F06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    41   1e-04
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    30   0.24 
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    29   0.42 
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    28   0.73 
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    28   0.73 
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    28   0.97 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.2  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   3.0  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   3.9  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    25   5.2  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   5.2  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   5.2  

>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
 Frame = +3

Query: 48  MDDFGDSFVEPEVDPA---ADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD----F 206
           ++DF D  V   VD +    DFL RE+  L     + ET     A+    N  +     F
Sbjct: 7   LEDFDDGLVTAPVDDSKNNTDFLEREKLALGEDAGQFETPEDKDALLNFENDSEAEQTRF 66

Query: 207 VE--VPSASAFDANGLLD--DAP-LGSXPTTVFKQEREEPEKIKIWREEQKKRLXXXXXX 371
            +   P  +   A+G      AP +G       + E  +PE ++ W+E+Q KR+      
Sbjct: 67  EQNFPPIDAEMQASGTFSAPKAPYMGQAEVHPPEDESGDPEPVRKWKEDQMKRIQERDES 126

Query: 372 XXXXXXXMLQIAKKELEDWYKSHEEQISK 458
                   ++ A+K ++D+Y++  ++  K
Sbjct: 127 SKKLRESNIEKARKAIDDFYENFNDKRDK 155


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +3

Query: 153 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSXPTTVFKQEREEPEKIKIWR 332
           +++  P+ +T+ N   + V    A+  D N ++  A        V K ++EE E+I   +
Sbjct: 594 SNSDTPSETTTPNNEQEQVS-NQANKVDLNKIISAAMESVNQKNVLKAQKEEEERIAQQK 652

Query: 333 EEQKKRL 353
            E+K+RL
Sbjct: 653 REEKRRL 659


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 510 FQILELVLALHSCWQL*FWKSVLHVICTS 424
           F +L L  A H C  + FWK++   +CT+
Sbjct: 411 FLVLHLTQAFHVCPSVTFWKTLFMSLCTA 439


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 299 FLFEYCC-WXGSQWSIIQQTVSIK 231
           FLF YCC W    W I+ +T  I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 299 FLFEYCC-WXGSQWSIIQQTVSIK 231
           FLF YCC W    W I+ +T  I+
Sbjct: 375 FLFSYCCSWGPMGWVIVGETFPIR 398


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 84  VDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 260
           V+   D  + E+N     + E+ETS  PPA+S ST   ++   + S++  +   L D A
Sbjct: 454 VEVHTDANSPEENNTPVTKKEVETS-KPPAVSGSTPPVNEAAVIESSNTLEKEPLSDVA 511


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 135  LEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 236
            L+D      PP  ++   N   D+  +P+ S+FD
Sbjct: 2417 LKDAANYGLPPITMNVKVNDTGDYSNIPTVSSFD 2450


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 153 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSXPTT 284
           +S  PP++  S N        P+ S +D NGL    P+GS   T
Sbjct: 187 SSGKPPSLHLSGNRRLSMGS-PTKSIYDQNGLTTPRPIGSDDLT 229


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 150 ETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSXPTTVFKQ 296
           E    P   S +  GF+D+V  P++     + ++    L S P+T + Q
Sbjct: 348 EAGGSPSKSSPTRPGFNDYVNRPTSVMPSLSNMIVSPDLDSSPSTDWNQ 396


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +3

Query: 114 EQNQLAGLE-DELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLD-DAPLGSXPTTV 287
           E  +L   E DEL+ S PP       +   + +E+    A   + +LD +  +    T V
Sbjct: 78  EDRELTSEELDELKKSLPPGQAIVRRDDDGNIIEIIHGEAKTLDDVLDKEISIAPAKTEV 137

Query: 288 FKQEREEPEKIKIWREEQK 344
            +Q  EE  K K  R+  K
Sbjct: 138 VRQLEEEAVK-KAARQSNK 155


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 168 PAISTSTNGFDDFVEVPSASA 230
           P I +ST   +DFVEVP  SA
Sbjct: 203 PQIFSSTLYINDFVEVPGTSA 223


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 414 LSWLSEAFLAXFVLPQHLSLLIFSF 340
           +SW++ A L     PQ  +LL+F F
Sbjct: 705 MSWIAGALLMHLPAPQAFALLVFLF 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,037
Number of Sequences: 5004
Number of extensions: 34412
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)