Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316F06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    30   0.98 
08_01_0081 - 574119-575204,575794-576191,576321-576382,576581-57...    28   5.2  
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981...    27   6.9  
02_05_1247 + 35233756-35233785,35234902-35236107                       27   6.9  
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998           27   9.1  
02_05_0591 - 30183105-30183869                                         27   9.1  
01_01_0534 + 3920356-3920867,3921141-3922134                           27   9.1  

>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 51  DDFGDSFVEPEVDPAADFLAREQNQLAGLEDE---LETSAPPP 170
           ++ GD   EPE +  ADF+  E+ +   LEDE    E  AP P
Sbjct: 56  EEGGDDEAEPEDESDADFVGDEEEEEEDLEDEDDLEEVKAPRP 98


>08_01_0081 -
           574119-575204,575794-576191,576321-576382,576581-576653,
           576754-576824,576961-577148,577230-577377,577465-577503,
           577601-577656,577745-577798,577900-578003,578117-578217,
           578726-578796,578912-578968,579306-579422,579653-579682
          Length = 884

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 453 KSVLHVICTSPPVLSW 406
           K+VLH+ C  PP +SW
Sbjct: 10  KAVLHMDCEKPPAISW 25


>08_02_1331 +
           26195949-26196132,26196606-26196710,26197270-26198127,
           26198669-26199458,26200240-26200329,26200636-26200712,
           26200797-26201383
          Length = 896

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +3

Query: 63  DSFVEPEVDPAAD-FLA--REQNQLA-GLEDELETSAPPPAISTSTNGFDDFVEV 215
           DS + PE DPA+  F++  RE+N LA G +DE   SA  P +ST        V+V
Sbjct: 435 DSLI-PE-DPASQSFVSPLREENALASGSDDEKNDSAVQPEVSTEAKRTTSSVKV 487


>02_05_1247 + 35233756-35233785,35234902-35236107
          Length = 411

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 63  DSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAI-STSTN 191
           D FV PEV         E+      + E  T+A  PA+ +TSTN
Sbjct: 288 DQFVRPEVVVIQVITGAEEEGAQAPQQEANTAASDPAVDATSTN 331


>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
          Length = 391

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 78  PEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDD 203
           P+ DP+ + L   ++ L  +E       PPP  +T+TN  DD
Sbjct: 222 PQADPSVELLVNFRHGLK-VETNGLAPPPPPPPTTTTNFHDD 262


>02_05_0591 - 30183105-30183869
          Length = 254

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 36  AYLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVE 212
           A+ K+ D     ++  V     F+  E N+    E     +A     + S  GFDD+VE
Sbjct: 52  AHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVE 110


>01_01_0534 + 3920356-3920867,3921141-3922134
          Length = 501

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 456 WKSVLHVICTSPPVLSW--LSEAFLAXFVLPQHLSL 355
           W S +  IC   P+++W   +E FL   ++  HL +
Sbjct: 383 WNSTIEGICAGVPMITWPHFAEQFLNEKLVVDHLKI 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,525
Number of Sequences: 37544
Number of extensions: 224799
Number of successful extensions: 821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)