Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316F06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.36 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.36 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 93  AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 209
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 229 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 267


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 93  AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 209
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 319 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 357


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 453 KSVLHVICTSPPVLSWLSEAFLAXFVLPQHLSLLIFSFVLLA 328
           +S LH+  TSPP  S  S+A  +    PQ  SLL  +   LA
Sbjct: 668 QSQLHLHLTSPPARSPSSQAQASQ--CPQTASLLSSTHSTLA 707


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 444 LHVICTSPPVLSWLSEAFLAXFVLPQHLSLLIFSFVLLAI 325
           LH++     V+ W+   FL  F+     S +  +F+L AI
Sbjct: 51  LHLLYQDVHVMIWIGFGFLMTFLRRYGQSAVGLTFLLGAI 90


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/22 (22%), Positives = 13/22 (59%)
 Frame = -3

Query: 483 LHSCWQL*FWKSVLHVICTSPP 418
           +++CW   F ++ + ++C   P
Sbjct: 389 IYACWSRDFRRAFVRILCACCP 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,461
Number of Sequences: 438
Number of extensions: 2108
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)