Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    29   0.42 
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    26   3.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   5.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   5.2  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    25   6.8  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   9.0  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   9.0  

>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 217 TTYGFPTASYPAVASHSASAARPYYVSTPTKHSH 318
           T Y    A YP V ++  +  +P  V+ PT+H H
Sbjct: 231 TAYPPQQAPYPPVQAYPQAPQQPIVVAQPTEHKH 264


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 206 DANCPADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
           D + P D   +KP +E P P L  E K  A +  + AP+  KEP
Sbjct: 145 DLSTPQD--SSKPIEEKPMPDLGAEQKESAPSSTKPAPD-AKEP 185


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 165 RWFGFIRISRAVRVSTRHHLRFPNS 239
           RWFG   I  ++   T ++ +FPN+
Sbjct: 577 RWFGGRTIKASILPETDYYFKFPNA 601


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 127  FGSIKSEGLGHSLDGLASFGSAGQFASPPGTTYGFPTASY-PAVASHSASAARPYYVSTP 303
            FG     G      G+ S G    F+S     YG  + SY P+   +S S A  Y  S+P
Sbjct: 1519 FGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPA--YMPSSP 1576

Query: 304  T 306
            +
Sbjct: 1577 S 1577


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 244 YPAVASHSASAARPYYVSTP 303
           YP   S + S A+P+YV++P
Sbjct: 78  YPTAGSCAHSEAQPFYVNSP 97


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 91  IHQKSLDNWVHWQQVR 44
           +H K + N  HWQ VR
Sbjct: 181 VHNKRISNIKHWQDVR 196


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 394 YSPKDTHGAHSETSYNTIKYSEELKPRVH 480
           Y P D+   H E ++  +KY  EL PR H
Sbjct: 164 YRP-DSLAIHYEHAHMALKYVLELVPRAH 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,560
Number of Sequences: 5004
Number of extensions: 38135
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)