Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316F03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 31 0.74
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 30 0.98
03_02_0104 + 5645285-5645677,5645990-5646034,5646225-5646454,564... 30 1.3
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 30 1.3
03_02_0103 + 5640652-5641029,5641458-5641693,5642292-5642367,564... 29 1.7
01_02_0007 + 10132380-10133201 29 2.3
03_05_0958 - 29200048-29200731 29 3.0
01_07_0082 - 40965947-40967023 29 3.0
12_01_0877 - 8415186-8415272,8415696-8416310 28 4.0
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 28 4.0
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 28 4.0
03_01_0515 - 3864796-3865425 28 4.0
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 28 4.0
05_05_0299 - 23930657-23932627 28 5.2
05_03_0040 - 7646525-7647775 28 5.2
05_03_0033 - 7585267-7586028 28 5.2
04_04_1260 + 32179648-32179807,32179926-32180026,32180400-321805... 28 5.2
05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053 27 6.9
05_03_0039 - 7621613-7622695 27 6.9
03_02_0311 - 7320832-7321554 27 6.9
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 27 9.1
08_02_0937 + 22801526-22802461 27 9.1
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 27 9.1
02_05_0255 - 27184306-27184914,27185009-27185272 27 9.1
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 30.7 bits (66), Expect = 0.74
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 118 APAFGSIKSEGLGHSLDGLASFGSAGQFASPPGTTYGFPTASYPAVASHSASAARP 285
APAFGS+ + G S G F P +G P++S P +S A A P
Sbjct: 92 APAFGSMSTGAFGQPSAPAFGSTSTGAFGQPSTQAFGTPSSS-PFGSSTPAFGASP 146
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +1
Query: 118 APAFGSIKSEGLGHSLDGLASFGSAGQFASPPGTTYGFPTASYPAVASHSASAARPYYVS 297
APAFGS G G S FGS+G ++ G T+++ +S S P + S
Sbjct: 288 APAFGST---GFGSSTT--PGFGSSGSTPGFGASSSGMSTSAFNFGSSPSFGQTIPTFGS 342
Query: 298 TP 303
TP
Sbjct: 343 TP 344
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 30.3 bits (65), Expect = 0.98
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 97 ADSSKFLAPAFGSIKSEGLGHSL--DGLASFGSAGQFASPPGTTYGFPTASYPAVASHSA 270
+D ++ + P G++ S+G SL D + S GSA AS PG +G P S
Sbjct: 156 SDEAEHMEPTDGNVSSDGAFFSLNNDKVNSKGSAN--ASSPGCLHGSPDISETCDTCLPP 213
Query: 271 SAARPYYVST 300
+ PY +T
Sbjct: 214 NVLLPYTENT 223
>03_02_0104 +
5645285-5645677,5645990-5646034,5646225-5646454,
5646549-5646624,5646705-5646781,5646960-5646990,
5647058-5647210,5647287-5647421,5647526-5647606
Length = 406
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 221 VVPGGDANCPADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEPG 72
V P A P +PN + S+E EP + + A P +EPG
Sbjct: 41 VAPEAAAEGPNEPNAGEASREPDAGQASREPDVAGPSRQPGAAGPSREPG 90
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 206 DANCPADPNEAKPSKE*PRPS-LLMEPKAGARNLEESAPNPPKEP 75
+ CP+ P + SKE R S +L E G +++E P+PP+ P
Sbjct: 1232 EPECPSPP-QIPESKELSRQSKILPESSPGNQDIEPECPSPPQIP 1275
>03_02_0103 +
5640652-5641029,5641458-5641693,5642292-5642367,
5642450-5642526,5642672-5642702,5642798-5642950,
5643259-5643300,5643372-5643440,5643645-5643752
Length = 389
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -1
Query: 221 VVPGGDANCPADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
V P A P++PN + S+E EP A + E P +EP
Sbjct: 27 VAPEAAAEGPSEPNAGEASREPDAGQASREPGAAGPSREPDVAGPSREP 75
>01_02_0007 + 10132380-10133201
Length = 273
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 242 DAVGKP*VVPGGDANCPADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
D P +P D N P P +P P+P +P A + L + PN P +P
Sbjct: 168 DPNAPPLPLPQPDPNAPPQPLP-QPDPNNPQPLPQPDPNAPPQPLPQPDPNSPPQP 222
>03_05_0958 - 29200048-29200731
Length = 227
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 203 ANCPADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
++ PA P E P + P P+ + +A R ++ A PP P
Sbjct: 97 SDAPAPPAEKLPQPQTPTPTGTPKLQAAERKAQKPAKEPPSPP 139
>01_07_0082 - 40965947-40967023
Length = 358
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 187 SAGQFASPPGTTYGFPTASYPAVASHSASAARPY 288
+A A PP +TY PTA YP A SAA Y
Sbjct: 164 AAAAAAYPPQSTYPPPTA-YPTAAKADGSAAAAY 196
>12_01_0877 - 8415186-8415272,8415696-8416310
Length = 233
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 194 PADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPK 81
P+ P EA+P E P P EP RN AP P K
Sbjct: 164 PSPPREAEPEPEPPLPP-PEEPTPLVRNEPSPAPTPEK 200
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 133 SIKSEGLGHSLDGLASFGSAGQFASPPGTTYGFPTASYPAVASHSASAA 279
SI + GH A+ ++G P FPT ++ AS SASA+
Sbjct: 462 SIYVDRHGHHQPSSAAGAASGTGGLDPAAVAAFPTRAFSPAASSSASAS 510
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +1
Query: 121 PAFGSIKSEG---LGHSLDGLASFGSAGQFA 204
P GS+ SE GH+L G ++FGS Q A
Sbjct: 177 PVLGSVNSESNTRRGHNLQGRSTFGSGTQIA 207
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 215 PGGDANCPADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPP 84
P +A+ P+ P EA P P PS+ P A P PP
Sbjct: 33 PEAEASPPSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPP 76
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 194 PADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKE 78
PA + KPS E P+P AGA +L+ S + ++
Sbjct: 488 PATSKQPKPSPEKPKPKPQAAATAGAESLQRSTASEKRQ 526
>05_05_0299 - 23930657-23932627
Length = 656
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 385 GSRYSPKDTHGAHSETSYNTIKYSEE 462
G ++ + +HG HS + Y+ I Y E+
Sbjct: 159 GPEFAAQASHGGHSSSKYDKIAYDEQ 184
>05_03_0040 - 7646525-7647775
Length = 416
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 194 PADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
P E KP E P+P EPK + E P+P EP
Sbjct: 304 PEPKPEPKPEPE-PKPEPKPEPKPEPKPYPEPKPDPKPEP 342
>05_03_0033 - 7585267-7586028
Length = 253
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 194 PADPNEAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
P +++P E P P EPK+ ++ +S P P EP
Sbjct: 147 PKSEPKSEPQSE-PNPETKAEPKSEPKSEPKSEPTPQTEP 185
>04_04_1260 +
32179648-32179807,32179926-32180026,32180400-32180530,
32180762-32181094,32181305-32181407
Length = 275
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 187 SAGQFASPPGTTYGFPTASYPAVASHSASAARPYYVST 300
S G FAS YG TA VA SA +Y+S+
Sbjct: 53 SGGGFASKSKFLYGKATADLKLVAGDSAGVVTAFYLSS 90
>05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053
Length = 576
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 11/45 (24%)
Frame = +1
Query: 163 LDGLASFGSAGQFASP-PGTTYGFP----------TASYPAVASH 264
L G + S+G+F+SP T GFP T +YP+VASH
Sbjct: 384 LSGKQTVSSSGEFSSPNENGTSGFPFDSVCEDKNGTVAYPSVASH 428
>05_03_0039 - 7621613-7622695
Length = 360
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 179 EAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
E KP E P P L EPK + E P P EP
Sbjct: 223 EPKPHPE-PEPKLKPEPKPEPKPEPEPKPEPKPEP 256
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 230 KP*VVPGGDANCPADPN-EAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
KP +P + +P E KP E P+P L EPK G + + + PN K P
Sbjct: 303 KPHPMPEPEPKPKPEPKPEPKPYPE-PKPKLKPEPKPGPKPI--APPNKHKPP 352
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -1
Query: 179 EAKPSKE*PRPSLLMEPKAGARNLEESAPNPPKEP 75
E KP+ E P+P EPK + E P P EP
Sbjct: 101 EPKPNPE-PKPEPKPEPKPEPKPYPEPKPKPKPEP 134
>03_02_0311 - 7320832-7321554
Length = 240
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 175 ASFGSAGQFASPPGTTYGFPTASYPAVASHSASA 276
ASFG G F PP P A+ VA +S S+
Sbjct: 184 ASFGWPGSFRPPPTAATTIPAAAAAPVAVNSGSS 217
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 196 QFASPPGTTYGFPTASYPAVASHSASAARP 285
QF +PP Y TA YP A+H+A ++ P
Sbjct: 488 QFTTPP---YHMSTAEYPYQAAHTAYSSLP 514
>08_02_0937 + 22801526-22802461
Length = 311
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 155 PRPSL-LMEPKAGARNLEESAPNPPKEP 75
P PS L P+ LEE PNPP EP
Sbjct: 37 PPPSRPLFCPRCRGEFLEEENPNPPPEP 64
>03_05_0488 -
24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +1
Query: 169 GLASFGSAGQFASPPGTTYGFPTASYPAVASHSASAARP 285
GLAS S+ AS P T G PT + PA A+ A+ RP
Sbjct: 32 GLASETSSSSSASAPSTP-GTPTVA-PAPAAAGATGPRP 68
>02_05_0255 - 27184306-27184914,27185009-27185272
Length = 290
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 190 AGQFASPPGTTYGFPTASYPAVASHSASAARPYYVSTPTKHSH 318
AG+ A PP GFP + PA +A P V T H H
Sbjct: 127 AGEHAPPPAA-TGFPAPAPPASVVTAAPTPAPAPVVTHGDHHH 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,135
Number of Sequences: 37544
Number of extensions: 274063
Number of successful extensions: 1016
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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