Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    42   6e-05
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    38   0.001
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    38   0.001
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   2.2  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    26   3.0  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   5.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   5.2  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   5.2  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   5.2  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   6.8  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   9.0  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +3

Query: 168 NDHFLLRWLRARQWDPEAAEKMLRDSLKWREKWEVDTTLPS--WQAPEVLEKHFPSGSTG 341
           +D  LLR+LRAR+++ + + +M     KWR+++ VD  + +  +   E + K++P     
Sbjct: 49  DDATLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQFYHK 108

Query: 342 FDKEGSPVIIVPFVGLDVWGLLHSFTRTEVIRMILKHLENYLAIAR 479
            D +G PV +     +D+   L+  T  E +   L +    LA+ R
Sbjct: 109 TDIDGRPVYVEQLGNIDL-KKLYQITTPERMMQNLVYEYEMLALKR 153


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 147 DVLRPEHNDHFLLRWLRARQWDPEAAEKMLRDSLKWREK 263
           D +  +  D  LLR+LRAR+W+ EAA +M   ++ WR +
Sbjct: 116 DAVNCDDPDGLLLRFLRARKWNVEAALEMFMKTVHWRSR 154


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 180 LLRWLRARQWDPEAAEKMLRDSLKWREKWEVDTTLPSWQAPEVLEKHFPSGST--GFDKE 353
           +LR+LRA +W    A+K + D+L WR  + V+   P     E+ E++        G+DK+
Sbjct: 638 ILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPD----EIQEENATGKQVLLGYDKD 693

Query: 354 GSPVI 368
           G P +
Sbjct: 694 GRPCL 698


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
            Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
 Frame = -2

Query: 289  LGRVVSTSHFSRHFNESLNIFSAASGSHCRALNHLNKKW-SLCSGLNTSLTLLRNFIRAN 113
            L   +    + R  N   ++FS  S  +   ++ L K W +L S    S  LL N   A 
Sbjct: 734  LAYFIQVCDYLRELNNFASLFSIISALNSSPIHRLRKTWANLNSKTLASFELLNNLTEAR 793

Query: 112  R*SSS---------IPTTAFDIGAIFTNCLFL 44
            +  S+         +P   F +G  FT+  FL
Sbjct: 794  KNFSNYRDCLENCVLPCVPF-LGVYFTDLTFL 824


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = +3

Query: 171 DHFLLRWLRARQWDPEAAEKMLRDSLKWREKWEVDTTLPSWQAPEVLEKHFPSGST---- 338
           D  LLR+L+AR++    +  ML +++ WR++  + + +   +    L ++F   S     
Sbjct: 52  DLTLLRFLKARKFVVTDSSDMLANAIVWRQQANLRSIMV--RGENGLNQNFVKASMYFIW 109

Query: 339 GFDKEGSPVIIV 374
           G DK+G  ++ +
Sbjct: 110 GQDKKGRAIVFL 121


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/73 (21%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
 Frame = -3

Query: 357 SLPCRSPCCRWESV-FLELRVPANSAELCLLPISLAI----SMNLLTSSLRLLGPIVELL 193
           S P R P C ++ +  L+ ++P+      ++P         S+N+ T+S+++LG +++++
Sbjct: 412 SYPERVPLCIFQYMDCLKSKLPSGEFLSKIVPFIYGCFENSSLNVQTTSIQILGTLLDII 471

Query: 192 TI-LIKNGHCVRV 157
            +  +K+  C ++
Sbjct: 472 DVTTVKSSICPKL 484


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 330 RWESVFLELRVPANSAELCLLPISLAISMNLLTSSLRLLGPIV 202
           ++ SV ++    A+  E C++P+ L     +L    + LGP+V
Sbjct: 557 KFRSVLIDEATQASEPE-CMIPLVLGAKQVVLVGDHQQLGPVV 598


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 348 KEGSPVIIVPFVGLDVWGLLHSFTRTEVIRMILK 449
           + G+ V+I P VG+   G +  FTR  V   IL+
Sbjct: 212 QHGARVLIHPVVGMTKPGDIDHFTRVRVYEAILQ 245


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 365 DNCSIRW-SGCVGSTALLHQD*SHSNDF 445
           DN SIR+ SG VGS A L  +  H N++
Sbjct: 286 DNESIRFVSGAVGSLAYLAPEAFHENEY 313


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 216 EAAEKMLRDSLKWREKW 266
           +AAEKM R  +KW+  W
Sbjct: 876 QAAEKMERGKVKWKVYW 892


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 282 LPSWQAPEVLEKHFPSGSTGFDKE 353
           L SW++P +   H+P  S GF K+
Sbjct: 295 LGSWKSPLLNALHYPFPSVGFLKD 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,633
Number of Sequences: 5004
Number of extensions: 48154
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)