Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316F01f
         (480 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3769|AAX52680.1| 4129|Drosophila melanogaster CG33519-P...    30   1.4  
AF242296-1|AAF59842.1| 1619|Drosophila melanogaster mechanosenso...    29   4.4  
AE014134-916|AAF52248.3| 1619|Drosophila melanogaster CG11020-PA...    29   4.4  
AE014134-915|AAS64642.1| 1712|Drosophila melanogaster CG11020-PB...    28   5.8  

>AE013599-3769|AAX52680.1| 4129|Drosophila melanogaster CG33519-PB
            protein.
          Length = 4129

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/60 (20%), Positives = 35/60 (58%)
 Frame = +1

Query: 103  NCTVS*TNHMHLKCKYFRIERYVKMIIVQDIDSDYNHFGEENIKIM*KLNYFSNSRISCF 282
            N ++  TN +    +Y+      K +IV++ +S+Y H  +EN+++  +++ +  ++++ +
Sbjct: 1391 NYSIKATNDLSQTSEYWSCTVKSKPVIVKNFESEYIHGEKENVQMTVRIDAYPEAKLTWY 1450


>AF242296-1|AAF59842.1| 1619|Drosophila melanogaster mechanosensory
            transduction channelNOMPC protein.
          Length = 1619

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -1

Query: 258  KII*FLHYFDIFFTKVIIIRIYILDYNHFDVAFNSKILAF*MHVVSL*HRAVIFS-LDLR 82
            +I+ FL +  +F    III   + D   F       +  F MH+V+L      FS  DLR
Sbjct: 1415 QILDFLSFHHLFGPWAIIIGDLLKDLARFLAVLAIFVFGFSMHIVALNQSFANFSPEDLR 1474

Query: 81   VYLSKNYLLGFSNNL 37
             +  KN   G+ +++
Sbjct: 1475 SFEKKNRNRGYFSDV 1489


>AE014134-916|AAF52248.3| 1619|Drosophila melanogaster CG11020-PA,
            isoform A protein.
          Length = 1619

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -1

Query: 258  KII*FLHYFDIFFTKVIIIRIYILDYNHFDVAFNSKILAF*MHVVSL*HRAVIFS-LDLR 82
            +I+ FL +  +F    III   + D   F       +  F MH+V+L      FS  DLR
Sbjct: 1415 QILDFLSFHHLFGPWAIIIGDLLKDLARFLAVLAIFVFGFSMHIVALNQSFANFSPEDLR 1474

Query: 81   VYLSKNYLLGFSNNL 37
             +  KN   G+ +++
Sbjct: 1475 SFEKKNRNRGYFSDV 1489


>AE014134-915|AAS64642.1| 1712|Drosophila melanogaster CG11020-PB,
            isoform B protein.
          Length = 1712

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 258  KII*FLHYFDIFFTKVIIIRIYILDYNHFDVAFNSKILAF*MHVVSL*HRAVIFS-LDLR 82
            +I+ FL +  +F    III   + D   F       +  F MH+V+L      FS  DLR
Sbjct: 1415 QILDFLSFHHLFGPWAIIIGDLLKDLARFLAVLAIFVFGFSMHIVALNQSFANFSPEDLR 1474

Query: 81   VYLSKNYLLGF 49
             +  KN   G+
Sbjct: 1475 SFEKKNRNRGY 1485


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,414
Number of Sequences: 53049
Number of extensions: 306499
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)