Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316F01f
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine rece...    29   1.3  
AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical...    28   4.0  
AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical...    28   4.0  
AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical...    28   4.0  
U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine rece...    27   5.3  

>U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine
           receptor, class v protein30 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 466 TCIMFNNRIELEYVPKKKYAMHIAFCSMVISSRKCRH*IICHLEFTSTL 320
           T + +N+  ELEYV  K         +M+I S  C   +IC++    T+
Sbjct: 153 TDVYYNSMEELEYVVPKDILSRNTLTAMLILSSMCLICVICYISLWITI 201


>AL117200-14|CAJ85779.1|  465|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4c protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 178 IIVQDIDSDYNHFGEENIKIM*KLNYFSNSRISCFFLFI 294
           +IV  ++S +  + +E +K    L YF++SRI     FI
Sbjct: 174 VIVDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYFI 212


>AL117200-12|CAB60583.1|  461|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4b protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 178 IIVQDIDSDYNHFGEENIKIM*KLNYFSNSRISCFFLFI 294
           +IV  ++S +  + +E +K    L YF++SRI     FI
Sbjct: 174 VIVDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYFI 212


>AL117200-11|CAD54172.1|  530|Caenorhabditis elegans Hypothetical
           protein Y50E8A.4a protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 178 IIVQDIDSDYNHFGEENIKIM*KLNYFSNSRISCFFLFI 294
           +IV  ++S +  + +E +K    L YF++SRI     FI
Sbjct: 243 VIVDYLESQFETYLQEELKPRRMLQYFNDSRIHACLYFI 281


>U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical
           protein T27F7.2c protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 441 LNSNMCLRKNMLCTLHFVQW 382
           L  +  L  ++ CTLHFVQW
Sbjct: 249 LTHHSVLESHLPCTLHFVQW 268


>U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical
           protein T27F7.2b protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 441 LNSNMCLRKNMLCTLHFVQW 382
           L  +  L  ++ CTLHFVQW
Sbjct: 618 LTHHSVLESHLPCTLHFVQW 637


>U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical
           protein T27F7.2a protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 441 LNSNMCLRKNMLCTLHFVQW 382
           L  +  L  ++ CTLHFVQW
Sbjct: 628 LTHHSVLESHLPCTLHFVQW 647


>U56963-6|AAB38123.3|  324|Caenorhabditis elegans Serpentine
           receptor, class v protein31 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 466 TCIMFNNRIELEYVPKKKYAMHIAFCSMVISSRKCRH*IICHL 338
           T + +N+  ELEYV  K         ++++ S  C   ++C++
Sbjct: 154 TDVYYNSMEELEYVVPKNILSRNTLMALIVLSSTCLICVVCYI 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,875,797
Number of Sequences: 27780
Number of extensions: 180856
Number of successful extensions: 288
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)