Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316E11f
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   4.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.6  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 328 RGPTTSTFTDLISRFFFFLNGIII 399
           +G  T+ + D +SRFFF  + +I+
Sbjct: 351 QGRATAIYIDKVSRFFFPFSFLIL 374


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 322 LTRGPTTSTFTDLISRFFF 378
           L++ PT S   D+ISR FF
Sbjct: 405 LSKFPTRSKRIDVISRIFF 423


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 322 LTRGPTTSTFTDLISRFFF 378
           L++ PT S   D+ISR FF
Sbjct: 405 LSKFPTRSKRIDVISRIFF 423


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 316 CGLTRGPTTSTFTDLISRFFFFLNGIIIVY 405
           CG  + P    +   I+   FFL+G  IVY
Sbjct: 79  CGKFKEPVAVFYASEIAIGLFFLHGRGIVY 108


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 58 CFRK*SCFFSFPEHF 14
          C R  SC++S   HF
Sbjct: 11 CRRNFSCYYSLKRHF 25


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +2

Query: 245 CPALQTETHCCFTAEIG 295
           C    ++T CCF  + G
Sbjct: 437 CKTCNSKTKCCFAQDDG 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,941
Number of Sequences: 438
Number of extensions: 2877
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)