Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316D12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   1.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   6.8  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   9.0  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.0  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    25   9.0  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = -2

Query: 250 LDEFHKQFSFNSRHIQVKRAVSDTVFCSYVSSWFCLVSSS 131
           LD+ H++  FN + + + +A+ D++    +   + ++ +S
Sbjct: 377 LDDIHRRTCFNGKRLYITKAIRDSMVGDSIHGLYSILETS 416


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 316 LFALYH-NPLFSQENETVIRHKILDEFHKQFSFNSRHIQVKRAVSDTVFCSYVSSWF 149
           LF  YH   +FS E   + R  +L +F +        + +     D   CSY S WF
Sbjct: 728 LFKNYHLQNIFSSEMRGLSR--VLHQFTRLVEDYMPSLAIHFKRQDIKTCSYASEWF 782


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 333 NEGTINYLHFITIPCFHKKMKR*FAIKYSTNSINNLASIL 214
           N+  I +L     P  H+K++  F+ +Y T+ + N+A  L
Sbjct: 583 NKKQIAHLRSELAPLLHEKIRTGFSGRYLTSGLVNMAEKL 622


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 253 ILDEFHKQFSFNSRHIQVKRAVSDTVFCSYV 161
           IL +   Q S + R+ ++KR +++  FC  V
Sbjct: 9   ILTQISNQQSLDKRYKRIKRLINNEQFCKNV 39


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 237 INNLASILVIFR*S-GQCQTLFSVLTSPPGFVWFLQVSAVV 118
           +N +  I++ F  S G  Q  +  L+  P FV  LQVS++V
Sbjct: 242 LNRITVIMIYFSPSNGAGQPAYMNLSFDPNFVISLQVSSLV 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,749
Number of Sequences: 5004
Number of extensions: 36912
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)