Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316D09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      28   0.73 
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   3.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.9  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    25   5.2  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   9.0  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 378 KLPVMTNYLNEHNLFNTFLDIPPGLVE 298
           K+    ++L EHN+FNTFL    G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 341 ICSIHSLIFHQASLRARSEICKG*SKIDTFYLHNMCNRNKMADQNSIPTNADSTRTPVPF 162
           + S+H +   Q+ + ARS    G   +  F  H   + +K  + +S P +  +T+TP P 
Sbjct: 631 LASLHDMRKSQSPICARSATSAG---LPRFEYHT--SLSKSLEHSSTPASLQATKTPSPS 685

Query: 161 Y 159
           +
Sbjct: 686 F 686


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 200  VSNFDPPFCFCCTYYVNKK 256
            VSN  PPF  C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -2

Query: 202 YLPTLIQRGHLCHFIFVAQSV*SLDVAMNAKRLIVTASVTEVLLAMIINNL-MYIIKI 32
           YLP L     + HFI  ++ + S+D + N++ L    ++T+  ++ ++N L + ++KI
Sbjct: 262 YLPLLYAEPGV-HFIESSEVLKSMDPSDNSRYLSFHQNITKDSISRLLNGLPLNLVKI 318


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 366 MTNYLNEHNLFNTFLD 319
           +T  +NEHN  N FLD
Sbjct: 81  LTGVINEHNFRNQFLD 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,125
Number of Sequences: 5004
Number of extensions: 40662
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)