Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316D08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   1.3  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   3.0  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   3.0  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   3.0  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   9.0  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 191 VGAESWASMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHEKNCNE 30
           VG   W ++         A+++  V +VSA  ++G  G  V +   N E N  +
Sbjct: 636 VGISLWTNLSMFKHVSTKALRLDDVVEVSAPSVSGEKGISVVEAALNVESNAED 689


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 92  NGFTGFRVAQNRGNHEKNCNESLHFSLY 9
           N +   R+  NR N   NC   L FSLY
Sbjct: 32  NVYFSLRILLNRQNEGNNCKYKLVFSLY 59


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 419 YGAGTGTPTCLVIVVCTLAPNNSSSGT 339
           +G G G P+C+ I V  + P   SS +
Sbjct: 148 FGVGNGNPSCVGIAVLAVLPQPISSSS 174


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 419 YGAGTGTPTCLVIVV-CTLAPNNSSSGT 339
           +GAG G P C  I +   ++P++SSS +
Sbjct: 148 FGAGNGNPNCAGIAIEAFVSPSSSSSSS 175


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 419 YGAGTGTPTCLVIVV-CTLAPNNSSSGT 339
           +GAG G P C  I +   ++P++SSS +
Sbjct: 148 FGAGNGNPNCAGIAIEAFVSPSSSSSSS 175


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -1

Query: 206 WAG*SVGAESWASMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHE 45
           W G S+GA S  +    +   P  ++ +IVT    A+  G        N G H+
Sbjct: 119 WTGLSIGALSVLAPGFQSEVAPADLRGTIVTTYQLAVTGGIF-IAACINMGTHK 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,459
Number of Sequences: 5004
Number of extensions: 19726
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)