Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316D08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834...    28   4.0  
03_01_0377 + 2940333-2940418,2940512-2940658,2940741-2940809,294...    28   5.2  
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039...    27   6.9  

>03_05_0222 +
           22082863-22082938,22083261-22083333,22083451-22083496,
           22083639-22083753,22083847-22083926,22084022-22084621,
           22084718-22084822,22084916-22085248
          Length = 475

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 147 STRGRKDQHSDPGVRCASEWFYWVQGRPEPRQPRKE 40
           ST G  DQ +   +R A      V+G+PEP +P+K+
Sbjct: 415 STGGTVDQKTIDSIRQAIGQNIQVKGQPEPSEPQKK 450


>03_01_0377 +
           2940333-2940418,2940512-2940658,2940741-2940809,
           2940958-2941123,2941208-2941436,2941528-2942054
          Length = 407

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 48  VVASVLGDPEPSKTIQKRSGHLGHYADLYGHGLSSGIAVHAGPAF 182
           VVA  LG  +PS + +  +  L HY D  GHGL     +  G  F
Sbjct: 167 VVAKWLGLTKPSSSGRLATRGLAHYPD--GHGLDPRFKMFVGHGF 209


>09_04_0463 -
           17803120-17803233,17803647-17803758,17803866-17803927,
           17804171-17804269,17804370-17804474,17804560-17804639,
           17806445-17806517,17806611-17806700,17807215-17807277,
           17808104-17808155,17808504-17808604,17809139-17809238,
           17809683-17809746,17810127-17810184,17810549-17810635,
           17810736-17810870,17810950-17811054,17811247-17811351,
           17811427-17811663,17812287-17812380,17812863-17813020,
           17813289-17813363,17813448-17813512,17814206-17814260
          Length = 762

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 454 WVWHRSVDGNRGTELERVLRR 392
           WVW RS  G R    ERVLRR
Sbjct: 20  WVWRRSASGTR-LGSERVLRR 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,850,230
Number of Sequences: 37544
Number of extensions: 169727
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)