Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    32   0.045
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    28   0.97 
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    27   2.2  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   3.9  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   3.9  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    25   6.8  

>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
 Frame = -3

Query: 501 DVEKKLAKT--NGLLQELAEEWERCERKLKDVGHWLEATTRTLETPQNAKKPLRDRLALR 328
           D  K L K   N +L++LAEE + CE+KL+ +           E  +   K + D+LAL 
Sbjct: 75  DARKNLRKRLRNDVLKDLAEEIQGCEKKLESLYE---------EVAKAKAKAVEDQLALE 125

Query: 327 EKIINDISTQKTKISYAVEKLNVHFGPDGVAAQSVGPEGVEANARQLTE 181
           E    D   +K K    VE  N          +   P  +E      T+
Sbjct: 126 EA---DKEAKKAKTEAPVEAANKSLRSRKKTPEIAAPANIEPEVAPTTK 171


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 371 LKMPRNRFETDWLSERKSLMTFPLRRQKYLTLSKNLTFTLVPMV 240
           L+ P  RF+     + + L T  LR++  LTL K+L  T +P++
Sbjct: 527 LQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSLLNTDLPLI 570


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 369 QNAKKPLRDRLALREKIINDISTQKTKISYAVEKLNVHFGP--DGVAAQSVGP 217
           +N  KP+  R+      +   S  K +I+  VEK+N    P  D +  +++ P
Sbjct: 224 ENVSKPINPRMERFSSEVKSSSILKQQIAAVVEKINYDIRPQRDQIPEENIVP 276


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 402 LEATTRTLETPQNAKKPLRDRLALREKIINDISTQKTKISYAVEKL 265
           L      L+  +N      ++L++ +  IN+I TQ   +    EKL
Sbjct: 289 LSIVASNLKQAENKTISYEEKLSIAQNSINEIQTQNRDLKLETEKL 334


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 480 KTNGLLQELAEEWERCERKLKDVGHWLEATTRTLET 373
           +TN  L++L    E   +   D+G+WL+AT R   T
Sbjct: 296 RTNEELKQLLVP-ELASKYQSDIGNWLDATKRYFRT 330


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 393  TTRTLETPQNAKKPLRDRLALREKIIN-DISTQKTKISYAVEKLNVHFGPDGVAAQSVG 220
            T   L   + + K L  R++L    I  +I TQK K+ +         GPD +A   VG
Sbjct: 1074 TPDILRKAEKSMKKLDQRVSLIPSSIEFNIKTQKDKVEFEKNYEKSKKGPDVIANALVG 1132


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 420 KDVGHWLEATTRTLETPQNAKKPLRDRLALREKIINDISTQKTKISYAVEK 268
           +D+    E   RTL     AK  L++      K+  D+S ++ K + + EK
Sbjct: 171 RDIESEDEQPLRTLSIEMAAKNALKEAKRENAKVPKDVSKKEAKTTKSKEK 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,551,008
Number of Sequences: 5004
Number of extensions: 25748
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)