Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0372 + 9522751-9522964,9523043-9523255,9523471-9523555,952...    28   5.2  
04_03_0360 - 14906919-14907764                                         27   9.1  
04_03_0330 - 14496906-14497751                                         27   9.1  

>02_02_0372 +
           9522751-9522964,9523043-9523255,9523471-9523555,
           9524373-9524448,9524974-9525150,9525473-9525566,
           9526357-9526466,9526568-9526657,9526752-9526832,
           9528468-9529277,9530777-9530896
          Length = 689

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 375 CFLDSLTIL*TFSHLNTVTLTKHDQTPSLLKTFLVMVKLFALW 503
           C L+ L  L T  H   +T  +H Q   L KT    +++  LW
Sbjct: 478 CTLEKLNYLQTDEHQKFITTKEHGQEQYLEKTSFPYLEVLNLW 520


>04_03_0360 - 14906919-14907764
          Length = 281

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 293 GNQHRTKDI*LMPESCLRRFQNKFTYIQIPNNGIG 189
           G   R KD+ L+   C  RF NK  ++   +N  G
Sbjct: 116 GRHGRAKDVALVYNQCYARFSNKGDFLAATDNAGG 150


>04_03_0330 - 14496906-14497751
          Length = 281

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 293 GNQHRTKDI*LMPESCLRRFQNKFTYIQIPNNGIG 189
           G   R KD+ L+   C  RF NK  ++   +N  G
Sbjct: 116 GRHGRAKDVALVYNQCYARFSNKGDFLAATDNAGG 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,854
Number of Sequences: 37544
Number of extensions: 274813
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)