Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316D01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...   152   3e-38
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    28   0.73 
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   2.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   3.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   6.8  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   9.0  

>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score =  152 bits (369), Expect = 3e-38
 Identities = 76/124 (61%), Positives = 89/124 (71%)
 Frame = +1

Query: 118 KLSIDALNLTGKRVLXRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAXSXVLMSXLG 297
           KL+I  ++L GK VL RVDFNVPL    ITNN RIV AL ++KYAL++   + +LMS LG
Sbjct: 6   KLAITDVDLKGKNVLIRVDFNVPLDGDRITNNARIVGALPTIKYALEQQPKAVILMSHLG 65

Query: 298 RPDGQXNLKYTLKPVAEELXKLLNKDVTFLTDCIGPEVETACXDPSAGSXILLEXLRFHI 477
           RP+G    KY+LKPVA EL KLL K V FL DC+GPEVE AC +   G  ILLE LRFHI
Sbjct: 66  RPNGARVAKYSLKPVAAELSKLLGKPVKFLDDCVGPEVEKACKEAKGGEVILLENLRFHI 125

Query: 478 EEEG 489
           EEEG
Sbjct: 126 EEEG 129


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +1

Query: 154 RVLXRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAXSXVLMSXLGRPDGQXNLKYTL 333
           ++  +   N   K  V       +AAL+  ++   KG  + V++   G P G   +   L
Sbjct: 431 KITGKEGLNFTGKARVFDAENDFIAALERGEFK--KGEKTVVIIRFEG-PKGGPGMPEML 487

Query: 334 KPVAEELXKLLNKDVTFLTD 393
           KP +  +   L KDV  LTD
Sbjct: 488 KPSSAIMGAGLGKDVALLTD 507


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 325 YTLKPVAEELXKLLNKDVTFLTDCIGPEVETACXDPSAGSXILLEXLRF-HIEEEGKGVH 501
           Y L    EEL K L     F  D I  ++ T C + S  +  +++ + F H     + +H
Sbjct: 332 YKLVSSNEELWKSLFLKDGFFWDSIDSKIRTMCLEQSLSACAIMKRVYFRHFNLRERWLH 391

Query: 502 A 504
           A
Sbjct: 392 A 392


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 27/106 (25%), Positives = 44/106 (41%)
 Frame = -1

Query: 485 SSSMWKRXFSSRIXDPAEGSXHAVSTSGPMQSVKNVTSLFSNFXSSSATGLRVYLRFXWP 306
           SSS      SS I   +  S    STS  + S  + +S FS+  SSS+  +     F   
Sbjct: 278 SSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS--MSSSSSFSSS 335

Query: 305 SGLPXCDISTXDXAPLSKAYLTESKAATMRWLFVITPSLSGTLKST 168
                  IS+   +P S ++ + + ++     F  T S S +  S+
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSS 381


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 221 MRWLFVITPSLSGTLKSTRXRTLLPVKLSASIL 123
           M++L + TP      +STR R LL V LS  IL
Sbjct: 426 MKYLQIDTPESKEYPRSTRPRALLIVALSQLIL 458


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 194 SLSGTLKSTRXRTLLPVKLSASILNLFKAIXSRKLNSFLI 75
           +LS  L ST    +   K SAS+LN+ +++   + N+  I
Sbjct: 147 ALSKKLGSTSQHQIATPKSSASLLNILRSLHDEQKNTLNI 186


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 11  SISLHRNLKISRKLPKTESFEE 76
           + SLHR+   S K+ K  SF+E
Sbjct: 139 NFSLHRSFSASGKMEKNNSFKE 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,202
Number of Sequences: 5004
Number of extensions: 28899
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)