Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316D01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   5.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 334 KPVAEELXKLLNKDVTFLTDCIGPEVETACXDPSAGSXILLEXLR 468
           K + EE+  LL++ +   +D    +V   C D ++    LL+  R
Sbjct: 444 KIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMGNLLQETR 488


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 334 KPVAEELXKLLNKDVTFLTDCIGPEVETACXDPSAGSXILLEXLR 468
           K + EE+  LL++ +   +D    +V   C D ++    LL+  R
Sbjct: 150 KIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMENLLQETR 194


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 368 TRM*HF*LTA*XRRLKQHVXILQLGXLSYWRXF 466
           TR+ ++ LT   +++K+ V  L L     WR F
Sbjct: 280 TRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREF 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,084
Number of Sequences: 438
Number of extensions: 1818
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)