Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316C06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 29 0.42
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 3.0
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 26 3.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.9
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 5.2
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 6.8
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 6.8
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 25 9.0
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 25 9.0
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 25 9.0
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 9.0
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 390 TAVATTLAFQMTREECLRAHPYVFSSKRLNRKSI 289
+A AT+L FQ R+ CLR + F+S +NR ++
Sbjct: 3 SAKATSLLFQGFRKNCLRLNRISFASGLINRFTV 36
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 97 KLKDGLIYKLGTFPLNVTVISYSKD 171
KL L++KL T N+ V S SKD
Sbjct: 392 KLNSNLLFKLQTLNRNIKVTSQSKD 416
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 398 TSLLTLSRHTAWSASSVSLTKALSLNVELAMTAGGT 505
T +L +R A S V T +NV++ +T GGT
Sbjct: 115 TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGT 150
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 16 MSEDLVNDVNQQGTTWRATTYPEFNEKKLKDGLIYKL 126
+ ED+ + +GT PEFN+ ++GL Y +
Sbjct: 270 IDEDITQMIQNEGTGTTIPPLPEFNDYFKENGLNYDI 306
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 72 CSSPSGPLLVNVVHQV 25
CSSP+GP LV V Q+
Sbjct: 545 CSSPNGPNLVGVTQQM 560
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 25 DLVNDVNQQGTTWRATTYPEFNEKK 99
DLV D + WRA Y E EKK
Sbjct: 949 DLVQDAKAENG-WRAVQYDEVGEKK 972
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 261 PIRPAPALVGDGTDVSVPFSSGVKLIWILAVLAVADNGHVQRERSKFIY 115
PI+ A ++ GT +S+P +L I+ +N V +R +Y
Sbjct: 101 PIKNAERMLSTGTRISLPSFDPAELAEIIRKFVAHENRWVPDQRGYSLY 149
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 378 TTLAFQMTREECLRAHPYVFSSKRLNRKS 292
TT +T+ CL+ Y FSS + R++
Sbjct: 510 TTECIYLTKSSCLKIGNYAFSSPYIERQT 538
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 278 LAMDTAQSDPHQPWSAMGLMYPYHSRLASNSSGY 177
L + A D W+A+G+MY SNS Y
Sbjct: 271 LVFEDADLDQAVKWAALGIMYNSGQICTSNSRIY 304
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -2
Query: 415 QSQKRCPGYRRCNHAGLSNDKRGVSESSSLRFQFQKIESKIYRRQCWQ 272
+S KR G R + GLS SL FQ S+ QC++
Sbjct: 5 RSVKRLLGARSLSSDGLSESVNSSDREDSLSFQTPSTPSEDEMPQCFE 52
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 100 LKDGLIYKLGTFPLNVTVISYSKDGQY 180
L+ GL+ K FP+N+ S S DG++
Sbjct: 146 LEHGLLRKQLHFPVNMNHASVSNDGRF 172
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 149 PLSATARTASIQMSLTPDENGTDTSVP-SPTRA 244
P S +++ S+ S+TP T+VP SPT A
Sbjct: 239 PSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLA 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,372
Number of Sequences: 5004
Number of extensions: 45436
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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