Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316C06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    28   0.067
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   3.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   4.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 0.067
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +1

Query: 175 QYPDEFDARREWYGYISPIADQGWCGSDWAVSIASIVG 288
           Q  DEF+A  + +G+++ + D+ +    W  +IASIVG
Sbjct: 466 QRQDEFNAEDQDWGFVAMVLDRLFL---WIFTIASIVG 500


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 179 IQMSLTPDENGTDTSVPSPTRAGAGLIGPCPLPALSA 289
           +Q+ +   +   + S  SP+ +   L+GPC   +L A
Sbjct: 864 LQVDIADSQQPLNLSKKSPSPSPRPLVGPCKALSLEA 900


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 411 LCQDTRLGQRAVF 449
           LC DTRL + AVF
Sbjct: 68  LCADTRLNKLAVF 80


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 351 EECLRAHPYVFSSKRLNRKSIADNAGNGHGP 259
           E+CL  + +V    RL  K      GNG GP
Sbjct: 124 EDCLYLNIWVPQKYRLRHKGDGSPGGNG-GP 153


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 457 EGAVTQCRIGNDC 495
           + AV QC+ GN+C
Sbjct: 217 KNAVYQCKYGNNC 229


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 351 EECLRAHPYVFSSKRLNRKSIADNAGNGHGP 259
           E+CL  + +V    RL  K      GNG GP
Sbjct: 124 EDCLYLNIWVPQKYRLRHKGDGSPGGNG-GP 153


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 457 EGAVTQCRIGNDC 495
           + AV QC+ GN+C
Sbjct: 14  KNAVYQCKYGNNC 26


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 411 LCQDTRLGQRAVF 449
           +C DTRL + AVF
Sbjct: 67  VCADTRLNKLAVF 79


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 265 RPNQTRTSPGRRW 227
           R N T  SPGR W
Sbjct: 908 RSNVTPRSPGRAW 920


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 91  EKKLKDGLIYKLGTF 135
           +K LKDG   K GTF
Sbjct: 58  QKILKDGFPIKCGTF 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,665
Number of Sequences: 438
Number of extensions: 3351
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)