Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS316C01f
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra... 29 0.27
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 0.81
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.5
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 3.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 4.3
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 4.3
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 25 5.7
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 24 7.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 24 7.6
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 24 7.6
>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
translocase complex subunit Tim21 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 29.1 bits (62), Expect = 0.27
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 43 GMISHQLLGRCQKEEARYMDCLEAYGLERGKVKCAHLFGDY 165
G+I + L+ K EA Y D EA+ L + +C ++FGD+
Sbjct: 84 GLIIYALVTSIWKGEAHYGD--EAFELLKANEECRYVFGDH 122
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 0.81
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 89 ASSFWQRPRSWWEIMPPVTSVN 24
A++ W ++WW+I PP+ VN
Sbjct: 203 AAAIWATGQTWWQI-PPIARVN 223
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 2.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 281 RGLTYFSSPVSFP*EICLCLSCLIAKNLLSCLV 183
R L Y S + + +C C+SC +A+N ++
Sbjct: 146 RKLVYIGSLIIY---VCFCISCALARNYAQLVI 175
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 3.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 77 WQRPRSWWEIMPP 39
W+R RS W+I PP
Sbjct: 128 WKRKRSLWDIKPP 140
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 115 YGLERGKVKCAHLFGDYHECSTLTKQLKRFLAIRHERQRQIS 240
+ + GK++C H G++ S L ++ ++ H+ +R I+
Sbjct: 1324 FEITMGKLRCLHALGEWDRLSQLAQE--NWIHAGHDARRYIA 1363
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.0 bits (52), Expect = 4.3
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Frame = +3
Query: 21 TVYGCYWWH----DFPPTSGSLPERGSQIHGLSRSLWFGTRKGQV 143
TV G WH D TS S R +WFGTR G +
Sbjct: 486 TVTGLCHWHMPLGDTKVTSLSFKSSPENYSDDGRFVWFGTRDGML 530
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 24.6 bits (51), Expect = 5.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 24 VYGCYWWHDFPPTSGSLPERGSQIHGLSR 110
V C W D P +G E+GS + ++R
Sbjct: 213 VQDCAMWPDGYPGTGRESEKGSNLEAITR 241
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.2 bits (50), Expect = 7.6
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +1
Query: 73 CQKEEARYMDCLEAYGLERGKVKCAHLFGD--YHECSTLTKQLKRFLAIRHERQRQISQG 246
C+ EE++ + C E E K K ++ G+ + T KQ++ F I H R S
Sbjct: 66 CKLEESKGIICQENLHTEGAKSKTENISGEDKSSQRRTRLKQIQEF--ISHRRSFLNSNA 123
Query: 247 KLTGDEKYVSPRVDSY*IRLSVS 315
EK ++ + ++ +S
Sbjct: 124 NSVESEKILAENNHMFNVKSKLS 146
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 24.2 bits (50), Expect = 7.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 233 KFLKENLQATKSM*APVWTVTRLD*VFQCTQSNCA 337
K LK+N+ S AP WT L F+C SN A
Sbjct: 43 KDLKQNI----SRDAPSWTFEHLFVAFKCAVSNLA 73
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 58 QLLGRCQKEEARYMDCLEAYGL 123
QL CQ EE +Y +E YGL
Sbjct: 328 QLYMDCQSEEHKYNVLVELYGL 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,122
Number of Sequences: 5004
Number of extensions: 31691
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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