Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316C01f
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024811-2|AAF60773.1|  121|Caenorhabditis elegans Hypothetical ...    56   7e-09
Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z82286-5|CAB05311.1|  130|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AC024811-2|AAF60773.1|  121|Caenorhabditis elegans Hypothetical
           protein Y54E10BL.5 protein.
          Length = 121

 Score = 56.4 bits (130), Expect = 7e-09
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   LSPFFRSPFTDVTGGMISHQLLGR-CQKEEARYMDCLEAYGLERGKVKCAHLFGDYHECS 177
           LSP  ++P TD     +S Q  GR C   E+++  C+EAYG + G+  C     D+ EC 
Sbjct: 14  LSPIVKAPITDTLSVPLSQQ--GRICGFFESQFYRCMEAYGAKMGRKYCDLEHRDFQECV 71

Query: 178 TLTKQLKRFLAIRHERQRQISQGKL 252
           T  KQ KR  AIR +R +    GK+
Sbjct: 72  TGDKQKKRADAIREQRCKLFLDGKI 96


>Z78542-2|CAB01744.2|  641|Caenorhabditis elegans Hypothetical
           protein F20D1.2 protein.
          Length = 641

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 61  LLGRCQKEEARYMDCLEAYGLERGKVKCAHLFGDY---HEC 174
           +LG    EE  YM+ L A  +++GK+  + + G Y   H+C
Sbjct: 378 ILGYGSDEEDNYMNMLIAMFIQKGKLHVSFVQGGYKKLHDC 418


>Z82286-5|CAB05311.1|  130|Caenorhabditis elegans Hypothetical
          protein W02A2.8 protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 77 WQRPRSWWEIMPPVTSVNGER 15
          W+RP S W  +  VT+V+ E+
Sbjct: 6  WKRPHSTWNKITAVTNVSSEK 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,051,307
Number of Sequences: 27780
Number of extensions: 179088
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)