Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    29   0.32 
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    27   2.2  
SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas...    25   6.8  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   9.0  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   9.0  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 466 WCPGKYYVWNRIAQWYHV 519
           W PGKY V+    QW+HV
Sbjct: 278 WSPGKYDVFGSSHQWFHV 295


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 417 YSFRISFEDPQFSLELMVPGK 479
           +S ++  EDP F  E++VPGK
Sbjct: 112 HSSKVDLEDPVFHGEIIVPGK 132


>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 343 GPKKSIKNYNFANFINAW 290
           G  K  K++ F NFI AW
Sbjct: 23  GDTKLFKSFRFKNFIEAW 40


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 484 YVWNRIAQW 510
           YVWNR+A W
Sbjct: 470 YVWNRVASW 478


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 262  EMSLHLF--KILSNTSFFNHKKKTFEIKLY 179
            ++S H F  KI  + SFFN K+K   I ++
Sbjct: 1131 DLSSHKFFDKIKKSLSFFNFKRKEASINIF 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,050
Number of Sequences: 5004
Number of extensions: 41364
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)