Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316B04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   0.97 
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    27   1.3  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    27   1.7  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   9.0  

>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 342 ILYSLEVSWIDDRYMGWNEI 283
           +LY++E SWI  +Y+G N I
Sbjct: 105 VLYNVEQSWIGYKYLGGNRI 124


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 72  WYKQCGSIYRLRLW*LFGYCFRC 140
           +Y +C   Y ++LW  F  CF C
Sbjct: 135 FYDECKRRYNIKLWKTFTDCFNC 157


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 72  WYKQCGSIYRLRLW*LFGYCFRC 140
           +Y +C   Y ++LW  F  CF C
Sbjct: 132 FYDECKRRYSIKLWKTFTDCFNC 154


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 3   FTKFVLNYFQNVFPIVFPVIHNSWYKQCGSIYRL 104
           F K + +   +   +   + HNS +  C +IYRL
Sbjct: 842 FYKILRSSLASFAQVFIDITHNSKFNSCCNIYRL 875


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,913
Number of Sequences: 5004
Number of extensions: 38838
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)