Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS316B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   0.42 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   1.3  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    27   2.2  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    25   5.2  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   6.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   9.0  

>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 39  KKMQKGKRKSD--EDGVSSPKKKKLNNSHE 122
           KK +K KRKS+  EDG S  KKKK   S +
Sbjct: 479 KKHKKSKRKSEESEDGESPKKKKKSKKSKD 508


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
 Frame = +3

Query: 36  SKKMQKGKRKSDEDGVSSPKK-KKLNNSHEQDXXXXXXXXXXXXXXXXXXXD--GVKGFK 206
           +K+    KRKSDE+ + S KK KK+  + E                         VK   
Sbjct: 269 TKETASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAA 328

Query: 207 KFTKNDKGSKFVKTKEKSNFSKD--EANG 287
           K T  D+ SK  K K     S+   +ANG
Sbjct: 329 KTTNRDEDSKGKKAKASPKVSQSSLKANG 357


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 39  KKMQKGKR-KSDEDGVSSPKKKKLNNSHEQD 128
           K+++KGKR K DE+    PKKKK   S +++
Sbjct: 221 KELKKGKREKKDEE--EKPKKKKQKKSSKKE 249


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 433 DFTTFLCICAANNLALCE 380
           D TTF+C+C +  L+L E
Sbjct: 220 DLTTFVCVCISEFLSLYE 237


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 192 VKGFKKFTKNDKGSKFVKTKEKSNFSKDEAN 284
           +K  KKF   D     +KTK    FSKD A+
Sbjct: 64  LKKTKKFIAFDLDGTLIKTKSGRVFSKDAAD 94


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 463 NSLQEFVLKSDFTTFLCICAANNLALCEISNTSAVILAL 347
           N + EF++++DFT+ +     N  AL EI+  +A   AL
Sbjct: 515 NQVVEFIIENDFTSHIGNIQPNRFAL-EIAALAAARKAL 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,903
Number of Sequences: 5004
Number of extensions: 16401
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)