Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315H12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 78 9e-16
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 38 0.001
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.005
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 31 0.079
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 31 0.14
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 30 0.18
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 29 0.42
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 1.3
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 1.3
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 1.3
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 1.7
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 27 2.2
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.0
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 3.9
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 3.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 5.2
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 5.2
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 5.2
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 5.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 5.2
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 6.8
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 6.8
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 25 9.0
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 25 9.0
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 77.8 bits (183), Expect = 9e-16
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 309
HAFHFHCISRWL TR VCPLDNREWEFQ+YGH
Sbjct: 76 HAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107
Score = 77.4 bits (182), Expect = 1e-15
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = -3
Query: 519 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG 409
IVVDNCAICRNHIMDLCIECQAN SA ++ECTVAWG
Sbjct: 36 IVVDNCAICRNHIMDLCIECQANTDSAAAQECTVAWG 72
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 464 NAKQIKPQP--LVKNAQLLGVFHAFHFHCISRWLKTRQVCPLDNR 336
N +++P P L + L H HFHC+ WL+ +Q CP+ R
Sbjct: 308 NTDEMEPLPRGLDMTPKRLPCGHILHFHCLRNWLERQQTCPICRR 352
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 35.5 bits (78), Expect = 0.005
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 470 VSNAKQIKPQPLV--KNAQLLGVFHAFHFHCISRWLKTRQVCPL 345
VS + P ++ +N L H +H C+ +W++TR +CP+
Sbjct: 625 VSTGSTLNPASMMVRRNYMLTPCHHLYHRQCLLQWMETRSICPV 668
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 31.5 bits (68), Expect = 0.079
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQVCPLDNREW 330
H FH HC+ W + CPL E+
Sbjct: 58 HYFHNHCLESWCRVANTCPLCRTEF 82
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 30.7 bits (66), Expect = 0.14
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = -1
Query: 404 HAFHFHCISRWLKT---RQVCPLDNR 336
H FH HCI WL T + CP+D +
Sbjct: 54 HIFHAHCIQNWLATSGSQGQCPMDRQ 79
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.18
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQV-CPLDNREW 330
H FH CI W+ T + CPL N ++
Sbjct: 225 HVFHTQCIDTWMTTMKASCPLCNEDY 250
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 431 KNAQLLGVFHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 312
K A + H F +C+ +WL+ CPL +E + G
Sbjct: 120 KQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVPHETVG 159
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -1
Query: 425 AQLLGVFH-AFHFHCISRWLKTRQVCPLDNREWEFQKYG 312
AQL H F + CI RW+ CP+ R + YG
Sbjct: 32 AQLSPCGHDQFDYSCICRWMDQSLTCPICKRHVDCVFYG 70
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 321 KVWSLNVI*KSCILHRSLTSSEHRELTCQYL 229
+VW L + + CI R S E+ E TC L
Sbjct: 25 EVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -1
Query: 404 HAFHFHCISRWL-KTRQVCPLDNRE 333
H FH CI++W+ R CP N E
Sbjct: 341 HEFHRPCIAKWIVDYRHACPTCNTE 365
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQ-VCPL 345
H FH CI +WL + Q CPL
Sbjct: 546 HFFHRECIDQWLTSSQNSCPL 566
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 123 YYFYARLL*TTDFQRIFN*NSHTEF 197
Y +Y ++L DF+++ N N H +F
Sbjct: 86 YCYYKKILKNKDFRKLLNENLHVDF 110
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = -1
Query: 404 HAFHFHCISRWLKT-RQVCPL 345
H FH CI +WL T CPL
Sbjct: 787 HFFHQACIDQWLTTGNNSCPL 807
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 434 VKNAQLLGVFHAFHFHCISRWLKTRQV-CPLDNRE 333
+KN +L F + CI WL+ CP+ N E
Sbjct: 264 IKNPAVLSTGFVFCYPCIQVWLQRHPFKCPVTNLE 298
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQVCPL 345
H FH +CI WL+ C +
Sbjct: 416 HYFHENCIKPWLRVNGTCAI 435
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 5.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 407 FHAFHFHCISRWLK 366
+H FH CI +W K
Sbjct: 217 YHVFHLSCIRKWCK 230
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 334 NGSSKSMVIKCHLEELHP 281
NG+ KS ++K +E+LHP
Sbjct: 553 NGAGKSTMLKLLIEQLHP 570
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 5.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQVCP 348
H + + C+ WLK + CP
Sbjct: 102 HTYCYECLLNWLKESKSCP 120
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 314 HTFGTP-ILYCLVDKLVESSTNGKYSGNG 397
H G P L+ +D+ +E KY GNG
Sbjct: 752 HRIGEPEYLFTRIDESMEEEWRSKYGGNG 780
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQVCPLDNREWE 327
H H S W T +CP+ N + E
Sbjct: 876 HGAHASHASEWFSTHTICPVPNCDCE 901
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = +2
Query: 137 QIIMNNRFSTNFQLKF 184
+++++NRF TN+ L+F
Sbjct: 592 EVVVSNRFKTNYTLRF 607
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQV--CPLDNREWEF 324
H FH C+ +W K+ CPL + F
Sbjct: 1581 HKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 404 HAFHFHCISRWLKTRQVCPL 345
H F + CI+ W + CPL
Sbjct: 273 HIFCWSCINGWTSKKSECPL 292
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 476 ICVSNAKQIKPQPLVKNAQLLGVFHAFH 393
+C++ + P ++KN QL V H H
Sbjct: 62 VCLATGVKCTPAGIIKNEQLGSVLHDCH 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,316
Number of Sequences: 5004
Number of extensions: 47625
Number of successful extensions: 120
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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