Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   2.5  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   4.4  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   4.4  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   4.4  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   4.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.4  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   4.4  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   4.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   4.4  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   4.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   5.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.7  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 493 PKSHNGSVY 467
           PK HNGS+Y
Sbjct: 31  PKDHNGSIY 39


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 95  NNNYKPLYYNIN 106


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 95  NNNYKPLYYNIN 106


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 95  NNNYKPLYYNIN 106


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 95  NNNYKPLYYNIN 106


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -3

Query: 435 SEECTV--AWGVSCIPFPLYFPLVE 367
           S EC V  +  + C+PF  Y P+ E
Sbjct: 136 SVECIVFNSGTILCVPFTTYTPVCE 160


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 320 NNNYKKLYYNIN 331


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 328 NNNYKPLYYNIN 339


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 328 NNNYKPLYYNIN 339


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 328 NNNYKPLYYNIN 339


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 317 NNNYKPLYYNIN 328


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 210 NNSYKILYVNFN 175
           NN+YK LY N N
Sbjct: 345 NNNYKKLYYNIN 356


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 445 GLICLAFDTQIHYVISANSTVVDNN 519
           G+IC A      YV++A   ++D N
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDEN 209


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 210 NNSYKILYVNFN*KFVENLLFI 145
           NN+YK LY N   K   N+ +I
Sbjct: 93  NNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 210 NNSYKILYVNFN*KFVENLLFI 145
           NN+YK LY N   K   N+ +I
Sbjct: 93  NNNYKKLYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 210 NNSYKILYVNFN*KFVENLLFI 145
           NN+YK LY N   K   N+ +I
Sbjct: 93  NNNYKKLYCNNYRKLYYNINYI 114


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 1   YTLLSNLCNFYLPC 42
           + + S+L +FY+PC
Sbjct: 343 FIIYSSLSSFYIPC 356


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 1   YTLLSNLCNFYLPC 42
           Y ++S+  +FY+PC
Sbjct: 192 YAVVSSSISFYVPC 205


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 102 LFIIIGVYYFYARLL*TTDFQRIFN*NSHTEFCKSYF 212
           LF IIG +   +  +   D+QR     S   F K ++
Sbjct: 13  LFFIIGFFNAISGAIKGNDYQRYHQQISGDRFSKDFY 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,691
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 24
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)