Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H09f
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   3.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   4.9  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   4.9  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    24   8.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    24   8.5  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    24   8.5  

>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 62  YKMTSSENFDEFMKTIGVGLITR 130
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 4    NLSLKSIKLIYKNGIRRQEIQDDF 75
            NL L   +++++NGI     QDDF
Sbjct: 1815 NLQLGGTQVMHRNGISHLTSQDDF 1838


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 186 YSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVILY 61
           +  P +      +T LAA    R    V  N +KFS + +LY
Sbjct: 240 HEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFSVDFLLY 281


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   KNLSLKSIKLIYKNGIRRQEIQDDFL 78
           K   LK + +   + IR+ ++QDDF+
Sbjct: 23  KTSILKFVPIAQNHRIRKMKVQDDFI 48


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 177 PSLRSSTVGVTALAALRVIRPTPMVFMNSSKFSEEVI 67
           P++ ++ +GV  + A ++  P P+   N ++    VI
Sbjct: 496 PNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVI 532


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 EEVTKXYSSPSLRSSTVGVTALAALRVIRPTPM 106
           +E T  YS+ SL  +  G  ALA L  ++ TP+
Sbjct: 7   KESTIVYSALSLAQAGRGPEALALLEPLKSTPI 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,600
Number of Sequences: 5004
Number of extensions: 22295
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)