Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H09f
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0308 + 16660751-16661450,16661656-16661819,16662615-166628...    27   4.5  
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242           27   4.5  
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686...    27   4.5  
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565...    27   6.0  

>10_08_0308 +
           16660751-16661450,16661656-16661819,16662615-16662800,
           16663297-16663533
          Length = 428

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 106 HRRGSDHPQSRQRCHPDRGAP 168
           HRRG      RQRC   RGAP
Sbjct: 87  HRRGPSLVPGRQRCGGARGAP 107


>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
          Length = 509

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -1

Query: 328 LLDLLQGVAFECAYGFHL--STVSAVLFELFA 239
           L+D+L G+  +  +GFHL  S + A++ ++FA
Sbjct: 274 LVDVLIGLQGKGGFGFHLDNSKIKAIILDMFA 305


>03_02_0254 +
           6862762-6863663,6863994-6864241,6864323-6864465,
           6864532-6864570,6865403-6865501
          Length = 476

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 160 HGRGDSVGGFAGDQTHADGLH 98
           HG G + G F G + H DG+H
Sbjct: 271 HGFGRTNGQFLGGRAHGDGVH 291


>04_04_0456 -
           25355409-25355751,25356047-25356205,25356317-25356513,
           25356602-25356794,25357044-25358287
          Length = 711

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 97  HEDHRRGSDHPQSRQRCHPDR 159
           H  HRRG  H Q +   HP R
Sbjct: 276 HHSHRRGIRHKQQQHHQHPRR 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,092,203
Number of Sequences: 37544
Number of extensions: 168567
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)