Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H09f
         (367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...   104   3e-25
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    47   6e-08
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    44   7e-07
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.4  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score =  104 bits (250), Expect = 3e-25
 Identities = 53/108 (49%), Positives = 70/108 (64%)
 Frame = +2

Query: 44  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYXLVTSSTFKTTE 223
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 224 MKFKPGXXXXXXXXXXXXVKSVCTFEGXTLKQVQKXPDGLEVTYVREF 367
           +KFK G            VKSVCT +G  L QVQK     + T  REF
Sbjct: 63  IKFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQKGEK--QTTIEREF 108


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 47.2 bits (107), Expect = 6e-08
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
 Frame = +2

Query: 41  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYXLVTSSTFKTT 220
           ++F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T 
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 221 EMKFKPGXXXXXXXXXXXXVK--SVCTFEGXTLKQVQKXPDGLEVTYVREF 367
              FK               K  +V + EG T K   +  D L+VT + EF
Sbjct: 60  TKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEF 110


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 43.6 bits (98), Expect = 7e-07
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = +2

Query: 44  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYXLVTSSTFKTTE 223
           +F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T  
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 224 MKFKPGXXXXXXXXXXXXVK--SVCTFEGXTLKQVQKXPDGLEVT 352
             FK               K  +V + EG T K   +  D L+VT
Sbjct: 59  KTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVT 103


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 228 FISVVLKVEEVTKXYSSPSLRSSTV 154
           FIS+++  +E+    +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,802
Number of Sequences: 438
Number of extensions: 1531
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)