Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    28   0.97 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   1.3  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   3.0  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    26   3.9  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   5.2  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   6.8  

>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
 Frame = +2

Query: 164 ESLSKFGHVRVWT-----FHYIPFHAIFRTFSFCFSGQFVCCVS*SDH 292
           E L K+G+  VW      F Y+P  A+     FC  G     +   DH
Sbjct: 132 ECLRKYGNANVWQYFTDLFDYLPLTALIEDRIFCLHGGLSPSIDTLDH 179


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 206 GMSTHARDQTLINFQQKVSRHAPDSSTRRALPTKLSKYANRYNCSLMTN 60
           G    A D   I   +K S+HA  + T   L TK        NC LM++
Sbjct: 419 GFEGDANDLFRIQILEKKSKHATSNGTVETLNTKFRLIHVFANCELMSS 467


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 169 FIKVWSRACVDIPLHSVPRNIPYV*FLF*WPVCLLRFIIGPRFSVCDSVEVLLTVFIKIS 348
           +IKV+ R+ +          +P   FLF W +    F+    F++  S+ +L    ++I 
Sbjct: 30  YIKVFGRSSIVTFFLLCFHLVPNALFLFPWTIITTSFVDANVFTLLSSILILSVYGVEIE 89

Query: 349 R 351
           R
Sbjct: 90  R 90


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 381 NSRRGWTGHRARNFNENSQQNFNRVTNRK 295
           N    WT  R+   +++SQ+NF R+T+ +
Sbjct: 103 NKVESWTLLRSPFIHKSSQENFERITHSR 131


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 310 SVEVLLTVFIKISRPVS-CPAPPRVPKTQDWRTNCMNYVAFYT 435
           S+  +L   + + +P + C   PR+ +  D+R    N++++ T
Sbjct: 254 SIPTILFTHVPLYKPANVCVDEPRIVRQLDFRVKSQNHLSYNT 296


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 375 RRGWTGHRARNFNENSQQNF--NRVTNRKSWSDYETQQTNWPLKQK 244
           R G    R R +      N    R T+R+ W+  ++ +  +PLK+K
Sbjct: 255 REGAEAIRLRWYGNMDNNNIFVERKTHREDWTGEKSVKARFPLKEK 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,521
Number of Sequences: 5004
Number of extensions: 43590
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)