Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315H08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331... 30 1.3
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 29 1.7
02_05_0380 + 28472494-28473090 29 1.7
07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253 29 3.0
07_03_1633 - 28281825-28284005 28 5.2
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 27 9.1
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 27 9.1
>01_06_0898 -
32832665-32832724,32832761-32832815,32832957-32833135,
32833218-32833328,32833600-32833647,32833810-32833949,
32834402-32834539,32834660-32834804,32834936-32835002,
32835226-32835329,32835444-32835647
Length = 416
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 342 NFAPCVLSSPSASSQNSRLADKLYELRRLL 431
+F CVL P+ SS +SR D LRRLL
Sbjct: 26 DFLSCVLQPPTPSSSSSRPDDDYAALRRLL 55
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 345 NF-NENSQQNFNRVTNRKSWSDYETQQTNW 259
NF NE QQ+FN+ + +Y+T++ NW
Sbjct: 450 NFANEKLQQHFNKHVFKMEQEEYKTEEINW 479
>02_05_0380 + 28472494-28473090
Length = 198
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +3
Query: 327 DCFH*NFAPCVLSSPSASSQNSRLADKLYELRRLLHMTH*VKQSKWWTVRRNTSVSDGTT 506
+C H PC +SPS+SS S + + + L+ H + +S+ +V ++S++ +T
Sbjct: 48 NCAHVRPCPCTCASPSSSSSAS--GEAVGRVHTLIEREHRIARSR--SVAASSSLAAAST 103
Query: 507 TSA 515
SA
Sbjct: 104 ASA 106
>07_03_0706 + 20850634-20850830,20851401-20851576,20851706-20852253
Length = 306
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 405 CPPILSFGNSRRGWTGHRA 349
CP I+ G RRG GHRA
Sbjct: 41 CPAIIVHGGGRRGGVGHRA 59
>07_03_1633 - 28281825-28284005
Length = 726
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +3
Query: 111 WESASRGTIGRVSGNFLLKVYQSLVTCVCGHSTTFRSTQYSVRLVFVLVASLFAAFHNRT 290
W + G N L+++ S+ C+ + TTF S +V V + + +H+R
Sbjct: 399 WNAVISGYAQNGRCNDALELFSSMARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRA 458
Query: 291 TIFG 302
G
Sbjct: 459 LSMG 462
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 359 DTGREILMKTVNKTSTESQTENRGPIMKRSK 267
+ G+EI +KT++KTS + E R +M +K
Sbjct: 539 EDGQEIAVKTLSKTSVQGLDEFRNEVMLIAK 569
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 345 NF-NENSQQNFNRVTNRKSWSDYETQQTNW 259
NF NE QQ+FN+ + +Y +Q NW
Sbjct: 453 NFTNEKLQQHFNQNVFKMEQEEYTREQINW 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,058
Number of Sequences: 37544
Number of extensions: 270841
Number of successful extensions: 727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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