Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      39   4e-05
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      39   4e-05
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          32   0.003
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   7.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +2

Query: 461 MVDSQTQHFCLRWNNYQRSI 520
           MVD  TQHFCLRWNNYQ SI
Sbjct: 1   MVD--TQHFCLRWNNYQSSI 18


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 38.7 bits (86), Expect = 4e-05
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +2

Query: 461 MVDSQTQHFCLRWNNYQRSI 520
           MVD  TQHFCLRWNNYQ SI
Sbjct: 1   MVD--TQHFCLRWNNYQSSI 18


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 479 QHFCLRWNNYQRSI 520
           QH+CLRWNNYQ ++
Sbjct: 9   QHYCLRWNNYQSNM 22


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 286 GPRFSVCDSVEVLLTVFIKISRPVSCPAPPRVP 384
           G + S+C S+ + LTVF  +   +  P    +P
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIP 310


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 363 TGHRARNFNENSQQNFNRVTNRKSWSDYE 277
           T H   N+N N+  N+N   N  ++++Y+
Sbjct: 89  TIHNNNNYNNNNYNNYN--YNNNNYNNYK 115


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 102 KFRWESASRGTIGRVSGNFLL 164
           +FR E+ +  T+G + G F+L
Sbjct: 448 RFRMETKAAKTLGIIVGGFIL 468


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 89  NRYNCSLMTNS*FIFSGNVFFIIFFPRA 6
           N   CS    + FI  G +FFI   P A
Sbjct: 116 NFSTCSSHPTAAFISYGTLFFIYVHPSA 143


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -3

Query: 396 ILSFGNSRRGWTGHRARNFNENSQQNFNRVTNRKSW 289
           I S  N+ +    +   N+N N+  N+N+    K++
Sbjct: 315 ISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNY 350


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 105 FRWESASRGTIGRVSGNFLL 164
           FR E+ +  T+G + G F+L
Sbjct: 1   FRMETKAAKTLGIIVGGFIL 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,874
Number of Sequences: 438
Number of extensions: 3213
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)