Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315H06f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 27 1.3
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 27 1.3
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 26 3.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 5.2
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 25 6.8
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 6.8
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 9.0
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 9.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.0
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 25 9.0
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +2
Query: 311 SKEHTTQL*ISYLENRRHQFYLLKHVNKAIELMKVYQ 421
+KE+ + + +LEN H+ +L ++ A++L +V+Q
Sbjct: 222 NKEYARNVLLQFLENHEHRDKILPILSTALDLEEVHQ 258
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 1.3
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Frame = +1
Query: 235 RKVNEFYEFCNET--IVVENKLQAFLKQQG-----THNTTVDLILGKPKTPILPPKTCEQ 393
R+ +EFY N+ IV + L+ Q NT L G+P P+ ++
Sbjct: 566 RRASEFYILFNQVSDIVNTSDTMEVLELQKKPPYIVQNTMYKLFFGEPLNPVAVK--AQR 623
Query: 394 SHRIDEGIPVDEVVKIKVETPKEIKQEDIEAEEN 495
DE + ++ + +E PKE+ + I+++++
Sbjct: 624 KVMPDENLDLNCPINGVIEVPKELLENIIQSDDS 657
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 184 KIDKNDRLPQKICDHCSRKVNEFYEFCNETIVVE-NKLQAFLKQQGTHNTTVDLILGKPK 360
++D+ RLP+ + C+ K+N +F E I E N + + K++G + ++ +
Sbjct: 254 EVDRLARLPKSVVISCNMKLN--LDFLKERIWEELNLYRIYTKRKGEMPDFSEALIVRKG 311
Query: 361 TPILPPKTCEQSHR 402
+ I + C + HR
Sbjct: 312 STI--EQVCNRIHR 323
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +1
Query: 220 CDHCSRKVNEFYEFCNETIVVENKLQAFLKQQGTHNTTVDLILGKPKTPILPPKTCEQSH 399
CD R + + E + + KLQ +K+ N T I +P ++ + +Q
Sbjct: 376 CDQAIRDLYQILEVEFHPLSICKKLQPIIKRLAESNDTAQYI--RPLQQVILTRLFQQLS 433
Query: 400 RIDEGIPVDEVVKIKV-ETPKEIKQEDIE 483
++ + I + V+ + E P + IE
Sbjct: 434 QVYDSISLKYVMDLATFEEPYDFNPGQIE 462
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 409 EGIPVDEVVKIKVETPKEIKQEDIEAEENYHYSDDSD 519
EGIP+ E +K + +E+ +D +E + Y+D +
Sbjct: 209 EGIPLPESIKARSMHCEELILKDFIPKEEHTYTDPDE 245
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 64 YYLLKIMDTICRLCCSDKFVNNYIFDEKNA 153
YY++K D R C D ++ NY+ D+ +A
Sbjct: 226 YYVMK--DPWHRKCAFDAYILNYLTDQSDA 253
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 199 DRLPQKICDHCSRKVNEFYEFCNETIVVENKLQAFLK 309
D +P +CD V+ F + + + +KLQA LK
Sbjct: 550 DNIPLVVCDLDKNSVSTFGKIVRLSRSLRSKLQAHLK 586
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 285 FHYNSFITKLIKLVNFTTAMITNLLGQP 202
FH+ I KL + N+TT ++ +L QP
Sbjct: 36 FHFTC-IDKLSYVSNYTTVFLSKVLNQP 62
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 241 VNEFYEFCNETIVVENKLQAFLKQQGTHNTTVDLILGKPKTPILPPKT 384
+ F E+I + L + Q G+ TT+ L T ILPP T
Sbjct: 12 IRSFDNRSRESIQFFSPLTLIVGQNGSGKTTIIECLKYATTGILPPNT 59
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 373 PPKTCEQSHRIDEGIPVDEVVKIKVETPKEIKQEDI 480
P T +Q + G+P++E+ + PK+ Q+ I
Sbjct: 513 PIPTVQQENEYISGVPLNELSLSSLPLPKDFDQKQI 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,298
Number of Sequences: 5004
Number of extensions: 38970
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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