Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315H06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 34 0.060
10_08_0782 + 20517103-20519601 31 0.56
09_03_0161 - 12921692-12921880,12922664-12922739,12923045-129231... 29 1.7
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 29 2.3
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 28 4.0
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 28 5.2
04_04_0225 + 23745404-23747788 28 5.2
09_02_0051 - 3606453-3606473,3606562-3606957,3608250-3608419,360... 27 6.9
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 27 6.9
09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361... 27 9.1
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 27 9.1
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 346 LGKPKTPILPPKTCEQSHRIDEGIPVDEVVKIKVETPKEIKQEDIEAEENYHYS 507
L P P PP E + + +E +PVD+VV+ + P+ + ++ E+ +Y+
Sbjct: 29 LAAPPPPPPPPAETELTEQREEEVPVDDVVEAAADVPRREEGLVVDGGEDVYYA 82
>10_08_0782 + 20517103-20519601
Length = 832
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 349 GKPKTPILPPKTCEQSHRIDEGIPVDEVVKIKVETPKEI 465
G P T ++P K + D G+P EVV VET KE+
Sbjct: 335 GDPVTSLIPRKLADDELSGDVGLPEYEVVDKGVETVKEV 373
>09_03_0161 -
12921692-12921880,12922664-12922739,12923045-12923157,
12923250-12923477
Length = 201
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 202 RLPQKICDHCSRKVNEFYEFCNETIVVENKLQAFLKQQGTHN 327
RL QK D+ V E + C E E KL AFL T N
Sbjct: 88 RLEQKKDDYFGEHVEEIVDVCTEASSCEIKLVAFLPSHLTSN 129
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 62 FITYLKLWILFAVCVVPINSSTIIYLTKRMHGTLK 166
F TY+K WI A+ + +S +I L RM G ++
Sbjct: 696 FSTYVKYWIRKAMLALLAENSGVIQLPARMEGIIR 730
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 163 KMALLPVKIDKNDRLPQKICDHCSRKVNEFYEFCN-ETIVVENKLQAFLKQQGTHNTTVD 339
++A+ P DK +L + + ++K++E E E +ENK ++Q THN T+
Sbjct: 30 RLAVAPTSEDK--KLDFTVLKYKNQKLSEQLEAHKFEYRALENKFAGLKEKQRTHNETLS 87
Query: 340 LI 345
L+
Sbjct: 88 LV 89
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 94 CRLCCSDKFVNNYIFDEKNAW 156
CR C+D VN Y DE+ AW
Sbjct: 541 CRRNCADFLVNGYSNDEEAAW 561
>04_04_0225 + 23745404-23747788
Length = 794
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 82 MDTICRLCCSDKFVNNYIFDEKNAWYLKMALLPVKIDKN 198
MD +LC +D F +F+E N W K+ + ++D +
Sbjct: 380 MDDCQKLCLTDCFCAVTVFNEGNCWKKKLPMSNGRMDSS 418
>09_02_0051 -
3606453-3606473,3606562-3606957,3608250-3608419,
3609654-3610707
Length = 546
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 385 CEQSHRIDEGIPVDEVVK--IKVETPKEIKQEDIEA 486
C + H++DE P+D + K I++E K K+ +EA
Sbjct: 425 CIEEHKLDEKYPIDLLQKRVIQLEKAKADKRRAVEA 460
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 403 IDEGIPVDEVVKIKVETPKEIKQEDIEAEENYHYSD 510
+D GI D +++ P EI E+ ++ H+SD
Sbjct: 717 VDVGITTDITESLELTPPSEIYSENQDSPSRLHFSD 752
>09_02_0052 -
3616013-3616033,3616116-3616514,3617925-3618094,
3619691-3620732
Length = 543
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 385 CEQSHRIDEGIPVDEVVK--IKVETPKEIKQEDIEA 486
C + H++DE P+D + + I++E K K+ +EA
Sbjct: 421 CIEEHKLDEKYPIDPLQRRVIQLEKAKADKRRAVEA 456
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 424 DEVVKIKVE-TPKEIKQEDIEAEENYHYSDDSD 519
+E VK++V+ T K +KQE E + SDD D
Sbjct: 90 EEEVKVQVKKTTKPVKQESSSDESSDESSDDED 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,923
Number of Sequences: 37544
Number of extensions: 213238
Number of successful extensions: 574
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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