Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    28   0.97 
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   1.3  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    27   2.2  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.0  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 311 PLFNAGFELYSLKETIIFKSICVAISI 231
           PL+  GFEL++++  I F +I V  SI
Sbjct: 384 PLYGVGFELWTMQPNIRFSNIYVGHSI 410


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 27  CRIFFYTFFYMTVSMLKQSLLHINAF 104
           C +F  TFF +T   L+   L INAF
Sbjct: 20  CGLFLLTFFLLTTCQLRILSLSINAF 45


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 232 IDMATQIDLNIIVSFKEYNSKPALNKG*YLTCY 330
           +++ T  D+N + SF+E N K  L +G Y   Y
Sbjct: 9   VELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGY 41


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 276 EGDDYIQINLCRHINNIFLSKYTD 205
           EG D   I LC  + N +L  +TD
Sbjct: 785 EGRDRASIQLCEKLTNDYLPDWTD 808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,709
Number of Sequences: 5004
Number of extensions: 37866
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)