Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   2.2  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   3.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.0  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   3.9  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   3.9  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   5.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.0  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   9.0  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   9.0  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   9.0  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   9.0  

>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 95  FKVFS-RLLLNRIIFAFFKPISIIFSMGIFK*LGCFTNVVEHILY 226
           F  FS + L     F FF  I I FS  I   LG +   V  +LY
Sbjct: 281 FPQFSLKKLAKDTYFVFFMAIKIFFSEPIVSSLGIYNGFVNGLLY 325


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -3

Query: 426  NQNYIALSKFWYTYLHVQIFANYDV--KLNKLK-KKVYRVLRES--HYQVWTDIRWKDVL 262
            N +   + + W T LH  +  N     K +  K   + RVLR    HYQ   +   + VL
Sbjct: 972  NNSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRHHYQDLPE-SVRRVL 1030

Query: 261  KHFPDGFTHLFLYK 220
               PDGFT  F+ K
Sbjct: 1031 GDLPDGFTSYFVEK 1044


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -3

Query: 471 QTFDKSVWLKVQEDMNQNYIALSKFWYTYLHVQIFANYDVKLNKLKKKVYR 319
           +T++K++  KV E + +N  A  ++ Y +L+  +F   DVK     +KVY+
Sbjct: 340 ETYEKAI-AKVPEVVEKN--AWRRYVYIWLNYCLFEEIDVKDVDRARKVYQ 387


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 119  LNRIIFAFFKPISIIFSMGIFK*LGCFTNVVEH--ILYKN 232
            L+ + F      S+I S+ IFK  GC+   VEH  I Y+N
Sbjct: 1154 LSTVDFTVNNTESLINSLKIFKKAGCYKLNVEHKIITYQN 1193


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 351 SHHNLQRSVHVNMC-TKTLIRQCNFDSCLLELSTKQIYQ 464
           S H   RS H++ C T  L   C +  C L  +TKQ  Q
Sbjct: 125 SKHQQLRS-HISACHTHLLPYPCTYQDCELRFATKQKLQ 162


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -3

Query: 447 LKVQEDMNQNYIALSKFWYTYLHVQIFANYDVKLNKLKKKVYRVLRESHYQ 295
           L + E+ +++  A  KF YT    +  A   ++ NKL+ +VY ++R S+ Q
Sbjct: 640 LVIYEEDDEDVEAAEKF-YTNDIQRDLAKKALECNKLENRVYDLVRSSYEQ 689


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 59  YDTLSRFPSSPNFKVFSRLLLNRIIFAFFKPISIIFS 169
           YD  +R PSS    V SR+L N  +    +P  I+ +
Sbjct: 305 YDCRTRVPSSTGLLVVSRVLRNSEVSKALEPGDILIA 341


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 3   FFFFYHLGFLIIPFFLLNDMTLFLDSRR-HLISKFS 107
           F FF  L F ++ F L    +LFL S    L S FS
Sbjct: 181 FLFFSFLSFPLLSFILFPCFSLFLSSNSFSLASPFS 216


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 448 VESSRRHESKLHCLIKVLVH 389
           VES  +    + CL+ VLVH
Sbjct: 162 VESQEQRNQTIECLVNVLVH 181


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 363 NYDVKLNKLKKKVYRVLRESHYQVWTDIRWKDVLKHF 253
           N+  K++++ +K+ R +   +    TD  W+ VLK +
Sbjct: 354 NHRKKISQVLRKINRDIELININYGTDSEWRGVLKGY 390


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -3

Query: 423 QNYIALSKFWYTYLHVQIFANYDVKLNKLKKKVYRVLRESHYQVWTDIRWKDVL 262
           Q Y+   K W +  HV  F  +D  LNK     Y  + E+  QV  ++   D L
Sbjct: 97  QQYVVRLKRWMSQTHVDAF--FDYLLNK-PNPYYLEIPETQPQVRCNVNVTDDL 147


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 447 LKVQEDMNQNYIALSK-FWYTYLHVQIFANYDVKLNKLKKKVYRVLRES 304
           + VQ+  N+ Y  ++  + +  LH+Q    YD  +NKL   +Y+  RE+
Sbjct: 63  VSVQKAYNKLYAKIANDYEFLRLHLQSITKYDEFMNKL-WNLYQKHREA 110


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 153 IGLKKAKMIRFNNRRLKTLKLGDD 82
           + LKK  +IR++N  L  LKL ++
Sbjct: 167 LSLKKKPVIRYDNNSLLCLKLAEE 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,222
Number of Sequences: 5004
Number of extensions: 41096
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)