Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H02f
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    31   0.11 
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   1.8  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   2.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   4.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   4.2  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   5.5  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   5.5  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   7.3  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    24   9.6  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    24   9.6  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    24   9.6  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +3

Query: 141 ALIASSVMALYRVPLHR---MKTARTHFHEVGTELELLRL--KYDVTGPSPEPLSNYLDA 305
           AL AS   A   VP  R   +    + +  V  +LE  ++  K D +G     L  Y DA
Sbjct: 15  ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73

Query: 306 Q-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 398
             Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 74  GGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 401 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 297
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 114 MGKISLFFLALIASSVMALYRVPLHRMKTARTH 212
           MGK+S+ + A IAS+ + ++  P +R      H
Sbjct: 1   MGKLSMLYNAAIASTFVKVFLFPSYRSTDFEVH 33


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 76  ISKSPSCGF*KQQWERYLYF 135
           + K P CGF    W  +L+F
Sbjct: 644 VGKGPGCGFWAPSWRVWLFF 663


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 364 TPDPP--TSGCLPKSATTPTSLVCCTTSTT 447
           TP PP  TS     S+  P++   CTTST+
Sbjct: 315 TPPPPASTSSTGTSSSPLPSTSTSCTTSTS 344



 Score = 25.0 bits (52), Expect = 5.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 PPTSGCLPKSATTPTSLVCCTTSTT 447
           P T    P S++TP +   CTTST+
Sbjct: 408 PVTPTVPPTSSSTPLTTTNCTTSTS 432



 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 367 PDPPTSGCLP--KSATTPTSLVCCTTSTT 447
           P PPTS       S+  PT+   CTTST+
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTS 234



 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 367 PDPPTSGCLP--KSATTPTSLVCCTTSTT 447
           P PPTS       S+  PT+   CTTST+
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTS 290


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 264 TGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHY 410
           +GP  +  S+ L A+Y+ VI  G+P +S      +G S ++  SK  +Y
Sbjct: 204 SGPDVQKASD-LCAKYFAVIPDGSPLKSAPTKISSGESRVY--SKGTNY 249


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 243 LRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPP 341
           LR  Y VT P  + ++N L A+Y     I TPP
Sbjct: 18  LRSGYSVTAPVSKSMANVLWARYAST-RIKTPP 49


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 171 IVPLRSWRSAPKKIKISFPLLFLEAATR 88
           I+P  ++R   K IK   P   L+AATR
Sbjct: 419 IIPRLNYREVNKVIKNPTPSFLLDAATR 446


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = +3

Query: 174 RVPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY-LDAQYYGVISIGTPPQSF 350
           ++P H + ++ T F+    +  L R+K      S  P +N     Q     S G     F
Sbjct: 270 KMPKHSLPSSPTPFNSNSGDSLLSRIKNSNQSSSERPTANNGAQEQNQSSSSAGNTSNDF 329

Query: 351 KVVFDTGSSNLWVPSKKC 404
             +   GS    +    C
Sbjct: 330 STLCSQGSDKTLLSDASC 347


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 205 LAVFIRCNGTLYSAITELAISAKKNKDIFPIVVFRS 98
           L++F+   GT      EL    +KN D+ P V+ +S
Sbjct: 315 LSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKS 350


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 318 LRSTEHQDNLTMVRVKGQSHRILISTAPVQCQPHESG 208
           +R T  ++ + M R  G  +  L S AP+   PH  G
Sbjct: 387 VRGTTSREIVQMARESGAKNVYLASCAPMITHPHVYG 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,593
Number of Sequences: 5004
Number of extensions: 39339
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)