Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS315H01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   1.7  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   6.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.0  

>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -3

Query: 270 NGHRNRMNNRQCL-HDWNFSDDRQLLDHRHFFYDGHFLNVGVVMVQSMHFVRYVDPEM 100
           NGH N  +N+    HD         L H+  +   H L+  ++  Q  H   Y  P +
Sbjct: 197 NGHSNLRDNKSISSHDLLTKGITLSLQHQDLWSGEHLLSQNLLWRQVTHLTEYASPSV 254


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 403 TSDTCS*KLIFQSKINICFLYGNGCLRL-TNMQIIILV 513
           TS  C  K  FQ+K++  FL+ +  L+L    ++++L+
Sbjct: 50  TSKECLPKFSFQNKLDFYFLFSDRVLQLQKERKVLVLI 87


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 116 TWILKCVTFP*--PNGSGSGKGLARLMATVAARTKMILW 6
           T+I  C+ +P   P+GS +G   ++ +A ++  T ++LW
Sbjct: 221 TFITSCIDWPAVTPHGSLAGVTKSQCIAQMSPITYLVLW 259


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 439 IGKLIFTNTCRSCVTTIPMTQLVSE 365
           +GK+I +N     +TTIP+T+   E
Sbjct: 321 LGKMITSNHAEEKLTTIPITEAKKE 345


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 156 RSESARHKRSACDQGAAYHQRSSSREDTAY 245
           RS S   +R   D G +YH  S S +++ +
Sbjct: 323 RSSSLTDERGLADSGNSYHHFSDSDDESLF 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,097
Number of Sequences: 5004
Number of extensions: 38570
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)